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Report for CCDS4315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4315.1 Public Homo sapiens 5 SLC36A2 24 110 108 CCDS HistoryNCBI Gene:153201Re-query CCDS DB by CCDS ID:4315.1Re-query CCDS DB by GeneID:153201See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4315.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335244.9 ENSP00000334223.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335244.9Link to Ensembl Protein Viewer:ENSP00000334223.4Re-query CCDS DB by Nucleotide ID:ENST00000335244Re-query CCDS DB by Protein ID:ENSP00000334223
Original member Current member NCBI NM_181776.3 NP_861441.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181776.3Link to Protein Sequence:NP_861441.2Re-query CCDS DB by Nucleotide ID:NM_181776Re-query CCDS DB by Protein ID:NP_861441Link to BLAST:NP_861441.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861441.2 483 Q495M3-1 483 100% 0 0

Chromosomal Locations for CCDS 4315.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151316817 151317088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151322046 151322215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151325286 151325452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151333224 151333322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151335329 151335547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151339060 151339144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151342888 151342983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151343510 151343598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151344177 151344267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151347297 151347460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGTCTGTGACAAAAAGTACTGAGGGTCCCCAGGGAGCCGTTGCCATCAAATTGGACCTTATGTCGCCTC
CTGAAAGTGCCAAGAAGTTGGAGAACAAGGACTCTACATTCTTGGATGAAAGTCCTTCAGAGTCAGCAGG
CTTGAAGAAGACCAAGGGCATAACAGTGTTCCAGGCCTTGATTCACCTGGTGAAAGGCAACATGGGCACA
GGGATCCTGGGACTACCCCTCGCTGTGAAGAACGCGGGCATCCTGATGGGCCCACTCAGTCTGCTGGTGA
TGGGCTTCATTGCCTGCCACTGTATGCACATCCTGGTCAAGTGTGCCCAGCGCTTCTGTAAGAGGCTTAA
CAAGCCCTTTATGGACTATGGGGACACGGTGATGCATGGACTAGAAGCCAACCCCAACGCCTGGCTCCAG
AATCACGCTCACTGGGGAAGGCATATCGTGAGCTTCTTCCTTATTATCACCCAACTTGGCTTCTGCTGTG
TGTACATTGTGTTTTTGGCTGATAATTTAAAACAGGTAGTGGAAGCTGTTAATAGCACAACCAACAACTG
CTATTCCAATGAGACGGTGATTCTGACCCCCACCATGGACTCGCGACTCTACATGCTCTCCTTCCTGCCC
TTCCTGGTGCTGCTGGTCCTCATCCGGAACCTCAGGATCTTGACCATCTTCTCCATGCTGGCCAACATCA
GCATGCTGGTCAGCTTGGTCATCATCATACAGTACATTACCCAGGAAATCCCAGACCCCAGCCGGTTGCC
ACTGGTAGCAAGCTGGAAGACCTACCCTCTCTTCTTCGGAACAGCCATTTTTTCTTTTGAAAGCATTGGT
GTGGTTCTGCCTCTGGAAAACAAGATGAAGAATGCCCGCCACTTCCCAGCCATCCTGTCTTTGGGAATGT
CCATCGTCACTTCCCTATACATTGGCATGGCGGCTCTGGGCTACCTGCGGTTTGGAGATGACATCAAGGC
CAGCATAAGCCTTAACCTGCCTAACTGCTGGCTGTACCAGTCTGTCAAGCTTCTCTACATTGCCGGCATC
CTGTGCACCTATGCCCTGCAGTTCTACGTCCCTGCAGAAATCATCATCCCCTTTGCCATCTCCCGGGTGT
CAACACGCTGGGCACTGCCTCTGGATCTGTCCATTCGCCTCGTCATGGTCTGCCTGACATGCCTCCTGGC
CATCCTCATCCCCCGCCTGGACCTGGTCATCTCCCTGGTGGGCTCCGTGAGTGGCACCGCCCTGGCCCTC
ATCATCCCACCGCTCCTGGAGGTCACCACGTTCTACTCAGAGGGCATGAGCCCCCTCACCATCTTCAAGG
ACGCCCTGATCAGCATCCTGGGCTTCGTGGGCTTTGTGGTGGGGACCTACCAGGCCCTGGACGAGCTGCT
CAAGTCAGAAGACTCTCACCCCTTTTCCAACTCCACCACTTTTGTTCGGTGA

Translation (483 aa):
MSVTKSTEGPQGAVAIKLDLMSPPESAKKLENKDSTFLDESPSESAGLKKTKGITVFQALIHLVKGNMGT
GILGLPLAVKNAGILMGPLSLLVMGFIACHCMHILVKCAQRFCKRLNKPFMDYGDTVMHGLEANPNAWLQ
NHAHWGRHIVSFFLIITQLGFCCVYIVFLADNLKQVVEAVNSTTNNCYSNETVILTPTMDSRLYMLSFLP
FLVLLVLIRNLRILTIFSMLANISMLVSLVIIIQYITQEIPDPSRLPLVASWKTYPLFFGTAIFSFESIG
VVLPLENKMKNARHFPAILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLNLPNCWLYQSVKLLYIAGI
LCTYALQFYVPAEIIIPFAISRVSTRWALPLDLSIRLVMVCLTCLLAILIPRLDLVISLVGSVSGTALAL
IIPPLLEVTTFYSEGMSPLTIFKDALISILGFVGFVVGTYQALDELLKSEDSHPFSNSTTFVR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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