CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS43193.3 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
43193.3 |
Public |
Homo sapiens |
3 |
CEP19 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:84984](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:43193.3](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:84984](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 43193.2 |
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation. |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 43193.3
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409690.5 |
ENSP00000387209.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409690.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000387209.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409690](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000387209](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001379469.1 |
NP_001366398.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001379469.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001366398.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001379469](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001366398](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001366398.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001379470.1 |
NP_001366399.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001379470.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001366399.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001379470](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001366399](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001366399.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_032898.5 |
NP_116287.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_032898.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_116287.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_032898](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_116287](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_116287.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 43193.3
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (492 nt): ATGATGTGCACTGCCAAGAAATGTGGGATTAGGTTTCAGCCTCCAGCTATTATCTTAATCTATGAGAGTG AAATCAAGGGGAAAATTCGCCAGCGCATTATGCCAGTTCGAAACTTTTCAAAGTTTTCAGATTGCACCAG AGCTGCTGAACAATTAAAGAATAATCCGCGACACAAGAGTTACCTAGAACAAGTATCCCTGAGGCAGCTA GAGAAGCTATTCAGTTTTTTACGAGGTTACTTGTCGGGGCAGAGTCTGGCAGAAACAATGGAACAAATTC AACGGGAAACAACCATTGATCCTGAGGAAGACCTGAACAAACTAGATGACAAGGAGCTTGCCAAAAGAAA GAGCATCATGGATGAACTTTTTGAGAAAAATCAGAAGAAGAAGGATGATCCAAATTTTGTTTATGACATT GAGGTTGAATTTCCACAGGACGATCAACTGCAGTCCTGTGGCTGGGACACAGAGTCAGCTGATGAGTTCT GA
Translation (163 aa): MMCTAKKCGIRFQPPAIILIYESEIKGKIRQRIMPVRNFSKFSDCTRAAEQLKNNPRHKSYLEQVSLRQL EKLFSFLRGYLSGQSLAETMEQIQRETTIDPEEDLNKLDDKELAKRKSIMDELFEKNQKKKDDPNFVYDI EVEFPQDDQLQSCGWDTESADEF
|