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Report for CCDS43223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43223.1 Public Homo sapiens 4 RBM47 24 110 108 CCDS HistoryNCBI Gene:54502Re-query CCDS DB by CCDS ID:43223.1Re-query CCDS DB by GeneID:54502See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43223.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295971.12 ENSP00000295971.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295971.12Link to Ensembl Protein Viewer:ENSP00000295971.7Re-query CCDS DB by Nucleotide ID:ENST00000295971Re-query CCDS DB by Protein ID:ENSP00000295971
Original member Current member EBI ENST00000381793.6 ENSP00000371212.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381793.6Link to Ensembl Protein Viewer:ENSP00000371212.2Re-query CCDS DB by Nucleotide ID:ENST00000381793Re-query CCDS DB by Protein ID:ENSP00000371212
Original member Current member NCBI NM_001098634.2 NP_001092104.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098634.2Link to Protein Sequence:NP_001092104.1Re-query CCDS DB by Nucleotide ID:NM_001098634Re-query CCDS DB by Protein ID:NP_001092104Link to BLAST:NP_001092104.1
Original member Current member NCBI NM_001371113.1 NP_001358042.1 Accepted alive Link to Nucleotide Sequence:NM_001371113.1Link to Protein Sequence:NP_001358042.1Re-query CCDS DB by Nucleotide ID:NM_001371113Re-query CCDS DB by Protein ID:NP_001358042Link to BLAST:NP_001358042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092104.1 593 A0AV96-1 593 100% 0 0
NP_001358042.1 593 A0AV96-1 593 100% 0 0

Chromosomal Locations for CCDS 43223.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40425904 40426143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40432651 40432862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40436441 40436647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40437771 40438893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGACCGCAGAGGATTCCACCGCAGCCATGAGCAGTGACTCGGCCGCCGGGTCCTCCGCCAAGGTGCCCG
AGGGCGTGGCGGGCGCGCCCAACGAGGCAGCACTGCTGGCGCTGATGGAGCGCACGGGCTACAGCATGGT
GCAAGAGAACGGGCAGCGCAAGTACGGCGGCCCACCGCCCGGCTGGGAGGGCCCGCACCCGCAGCGTGGC
TGCGAGGTCTTCGTGGGCAAGATCCCGCGCGACGTGTACGAGGACGAGCTGGTGCCCGTGTTCGAGGCCG
TGGGCCGCATCTACGAGCTGCGCCTCATGATGGACTTTGACGGCAAGAACCGCGGCTACGCCTTCGTCAT
GTACTGCCACAAGCACGAGGCCAAGCGCGCAGTGCGTGAGCTCAACAACTACGAGATCCGCCCGGGCCGC
CTGCTCGGCGTGTGCTGCAGCGTGGACAACTGCCGCCTCTTCATCGGCGGGATCCCCAAGATGAAGAAGC
GCGAGGAAATCCTGGAGGAGATTGCCAAGGTCACCGAGGGCGTGCTGGACGTGATCGTCTACGCCAGCGC
GGCCGACAAGATGAAGAACCGCGGCTTCGCCTTCGTGGAGTACGAGAGCCACCGCGCGGCTGCCATGGCT
CGCCGCAAGCTCATGCCTGGCCGCATCCAGCTGTGGGGCCACCAGATCGCCGTGGACTGGGCCGAACCTG
AGATCGACGTGGACGAGGACGTGATGGAGACCGTGAAGATCCTCTACGTGCGCAACCTCATGATCGAGAC
CACCGAGGACACCATCAAGAAGAGCTTCGGCCAGTTCAACCCCGGCTGCGTGGAGCGCGTCAAGAAGATC
CGCGACTACGCCTTCGTGCACTTCACCAGCCGCGAGGATGCCGTGCATGCCATGAACAACCTCAACGGCA
CTGAGCTGGAGGGCTCGTGCCTGGAGGTCACGCTGGCCAAGCCCGTGGACAAGGAGCAGTACTCGCGCTA
CCAGAAGGCAGCCAGGGGCGGCGGCGCGGCTGAGGCAGCGCAGCAGCCCAGCTACGTGTACTCCTGCGAC
CCCTACACACTGGCCTACTACGGCTACCCCTACAACGCGCTCATTGGGCCCAACAGGGACTACTTTGTGA
AAGCAGGCAGCATAAGAGGCCGAGGGCGAGGTGCAGCTGGCAACAGAGCCCCAGGGCCTAGGGGTTCCTA
CCTCGGGGGATATTCTGCTGGTCGTGGTATATATAGCCGATATCATGAAGGGAAAGGAAAGCAGCAAGAA
AAAGGATATGAACTGGTGCCGAATTTGGAAATCCCTACCGTCAACCCAGTTGCCATTAAACCTGGTACAG
TAGCCATCCCTGCCATTGGGGCTCAGTATTCCATGTTTCCAGCAGCTCCAGCCCCTAAAATGATTGAAGA
TGGCAAAATCCACACAGTGGAGCACATGATCAGCCCCATTGCTGTGCAGCCAGACCCAGCCAGTGCTGCT
GCCGCCGCAGCCGCGGCCGCAGCCGCCGCAGCCGCTGTCATTCCCACTGTGTCGACGCCACCACCTTTCC
AGGGCCGCCCAATAACTCCAGTATACACGGTGGCTCCAAACGTTCAGAGAATTCCTACTGCCGGGATCTA
CGGGGCCAGTTACGTGCCATTTGCTGCTCCAGCTACAGCCACGATCGCCACACTACAGAAGAACGCGGCA
GCCGCGGCCGCCATGTATGGAGGATACGCAGGCTACATACCTCAGGCCTTCCCTGCTGCTGCCATTCAGG
TCCCCATCCCCGACGTCTACCAGACATACTGA

Translation (593 aa):
MTAEDSTAAMSSDSAAGSSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRG
CEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGR
LLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA
RRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKI
RDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSYVYSCD
PYTLAYYGYPYNALIGPNRDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQE
KGYELVPNLEIPTVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTVEHMISPIAVQPDPASAA
AAAAAAAAAAAAVIPTVSTPPPFQGRPITPVYTVAPNVQRIPTAGIYGASYVPFAAPATATIATLQKNAA
AAAAMYGGYAGYIPQAFPAAAIQVPIPDVYQTY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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