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Report for CCDS4323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4323.1 Public Homo sapiens 5 FAM114A2 24 110 108 CCDS HistoryNCBI Gene:10827Re-query CCDS DB by CCDS ID:4323.1Re-query CCDS DB by GeneID:10827See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351797.9 ENSP00000341597.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000351797.9Link to Ensembl Protein Viewer:ENSP00000341597.4Re-query CCDS DB by Nucleotide ID:ENST00000351797Re-query CCDS DB by Protein ID:ENSP00000341597
Original member Current member EBI ENST00000520667.5 ENSP00000430384.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520667.5Link to Ensembl Protein Viewer:ENSP00000430384.1Re-query CCDS DB by Nucleotide ID:ENST00000520667Re-query CCDS DB by Protein ID:ENSP00000430384
Original member Current member EBI ENST00000522858.5 ENSP00000430489.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522858.5Link to Ensembl Protein Viewer:ENSP00000430489.1Re-query CCDS DB by Nucleotide ID:ENST00000522858Re-query CCDS DB by Protein ID:ENSP00000430489
Original member Current member NCBI NM_001317993.2 NP_001304922.1 Accepted alive Link to Nucleotide Sequence:NM_001317993.2Link to Protein Sequence:NP_001304922.1Re-query CCDS DB by Nucleotide ID:NM_001317993Re-query CCDS DB by Protein ID:NP_001304922Link to BLAST:NP_001304922.1
Original member Current member NCBI NM_001317994.2 NP_001304923.1 Accepted alive Link to Nucleotide Sequence:NM_001317994.2Link to Protein Sequence:NP_001304923.1Re-query CCDS DB by Nucleotide ID:NM_001317994Re-query CCDS DB by Protein ID:NP_001304923Link to BLAST:NP_001304923.1
Original member Current member NCBI NM_018691.4 NP_061161.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018691.4Link to Protein Sequence:NP_061161.2Re-query CCDS DB by Nucleotide ID:NM_018691Re-query CCDS DB by Protein ID:NP_061161Link to BLAST:NP_061161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304922.1 505 Q9NRY5 505 100% 0 0
NP_001304923.1 505 Q9NRY5 505 100% 0 0
NP_061161.2 505 Q9NRY5 505 100% 0 0

Chromosomal Locations for CCDS 4323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 153992976 153993110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 153994919 153994972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 153997803 153997875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154002251 154002390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154002847 154002969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154011241 154011320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154026399 154026522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154027176 154027334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154028149 154028283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154029489 154029580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154033791 154033883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154034278 154034377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154034744 154034953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGTCAGATAAAGATGATATTGAGACTCCACTGCTAACTGAAGCAGCCCCCATCCTTGAAGATGGAAACT
GTGAGCCAGCCAAGAATTCTGAGTCTGTTGACCAAGGTGCCAAACCAGAGAGTAAATCAGAACCTGTAGT
TTCCACTCGGAAAAGACCAGAGACCAAACCTTCCAGTGACCTTGAGACTTCAAAAGTTCTCCCTATTCAG
GATAATGTTTCCAAAGATGTACCCCAGACCAGATGGGGTTATTGGGGGAGCTGGGGCAAGTCCATACTCT
CCTCAGCCTCGGCTACAGTAGCTACAGTAGGACAAGGCATTTCAAATGTCATCGAGAAGGCAGAGACTTC
CCTTGGAATCCCTGGTCCCAGTGAAATTTCAACTGAAGTCAAGTATGTAGCAGGAGAGACAAATGCCAAA
GAGAATGAAAACTCCTCCCCAGTGGCTGGGGCATTTGGTGTATTCTCTACCATCTCTACTGCTGTTCAGA
GCACAGGAAAGAGTGTTATAAGTGGGGGTTTGGATGCCTTAGAATTCATTGGAAAAAAGACAATGGATGT
GATAGCAGAAGGGGATCCTGGATTTAAAAGAACCAAGGGTCTGATGAACCGAAATGCTACACTATCTCAG
GTTTTACGAGAGGCGAAGGAGAAAGAAGAGATACGGACCTCCAATGAGGTTACCGTGGAAACAGACAAGA
AAACTCATTATGGGCTACTCTTTGATGAATTTCAAGGCCTTTCACATCTAGAAGCTCTGGAGATGCTTTC
CCAAGAAAGTGAAATAAAGGTGAAATCTATCCTTAATTCTCTGAGTGGAGAAGAATTAGAGACTCTAAAA
GTTGAATTAGAGCAACTCAAAGAAACATTTTCTCTAGCAGAATTTTGTGAAGAAGAGGAAGAAGAGAAAA
AAGGGGATGAAGATTTTACCAAGGACATAACAGAGCTGTTTTCCCAGCTGCACGTTTCCTCCAAACCAGA
GAAACTTGCCAGGGCAAGAAATACCGCCCACGAATGGATCAGGAAGTCTCTGACCAAGCCATTAGCAGAG
AATGAAGAAGGAGAAAAACAGTCGGAAGCAGAAAATACTGAGCAAGTCAACAAAAATTCAATAGAGGATA
TCCATGCGTTTGCAATCCGGAGCCTGGCTGAACTGACTGCCTGCTCAATTGAACTATTCCACAAAACAGC
TGCATTGGTTCTGCATGGCAGGAAGCAGGAAGTGACAGCCATAGAAAGGAGCCAAACTCTTTCCCAGATG
ACAATTGTGTTGTGTAAAGAGTTGTCCTCTCTGTCTAAAGAGTTCACTACCTGCCTAACAACTGCTGGGG
TCAAAGAAATGGCAGATGTCCTTAACCCATTAATCACTGCAGTATTTCTAGAGGCATCAAACAGTGCCTC
CTACATCCAGGACGCCTTTCAGCTACTCTTACCTGTGCTAGAGATCTCTCTCATTGAGAACAAGATTGAA
TCACACAGACATGAGCTGCAGGGCCAGAAACCTTTGTTAGAACATTGA

Translation (505 aa):
MSDKDDIETPLLTEAAPILEDGNCEPAKNSESVDQGAKPESKSEPVVSTRKRPETKPSSDLETSKVLPIQ
DNVSKDVPQTRWGYWGSWGKSILSSASATVATVGQGISNVIEKAETSLGIPGPSEISTEVKYVAGETNAK
ENENSSPVAGAFGVFSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTKGLMNRNATLSQ
VLREAKEKEEIRTSNEVTVETDKKTHYGLLFDEFQGLSHLEALEMLSQESEIKVKSILNSLSGEELETLK
VELEQLKETFSLAEFCEEEEEEKKGDEDFTKDITELFSQLHVSSKPEKLARARNTAHEWIRKSLTKPLAE
NEEGEKQSEAENTEQVNKNSIEDIHAFAIRSLAELTACSIELFHKTAALVLHGRKQEVTAIERSQTLSQM
TIVLCKELSSLSKEFTTCLTTAGVKEMADVLNPLITAVFLEASNSASYIQDAFQLLLPVLEISLIENKIE
SHRHELQGQKPLLEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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