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Report for CCDS43242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43242.1 Public Homo sapiens 4 CCDC158 24 110 108 CCDS HistoryNCBI Gene:339965Re-query CCDS DB by CCDS ID:43242.1Re-query CCDS DB by GeneID:339965See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43242.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388914.7 ENSP00000373566.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000388914.7Link to Ensembl Protein Viewer:ENSP00000373566.2Re-query CCDS DB by Nucleotide ID:ENST00000388914Re-query CCDS DB by Protein ID:ENSP00000373566
Original member Current member NCBI NM_001042784.1 NP_001036249.1 Accepted alive Link to Nucleotide Sequence:NM_001042784.1Link to Protein Sequence:NP_001036249.1Re-query CCDS DB by Nucleotide ID:NM_001042784Re-query CCDS DB by Protein ID:NP_001036249Link to BLAST:NP_001036249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036249.1 1113 Q5M9N0-1 1113 100% 0 0

Chromosomal Locations for CCDS 43242.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76313170 76313246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76323302 76323409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76325857 76326015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76328900 76328967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76331344 76331403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76332432 76332491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76334022 76334167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76350996 76351121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76351720 76351812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76353123 76353281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76355324 76355436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76357374 76357526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76362126 76362315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76367294 76367776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76369426 76369623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76371417 76371536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76379290 76379404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76382610 76382720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76383662 76383738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76384088 76384415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76384556 76384665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76396269 76396486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76403138 76403207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGGAATCAAAAGCTTGGGAATCAAATAATGAAGATCTTTTATCAAGTAGTGGTGTCACATCTAATGGAG
GTTCTTCAAGTTCATTTTTTGTGTCATCTATTCGTGGTACAATAATTGAAAACACATCTTCAGCTGGGAC
TTTGACACAGGTTCCTTTTTTCCCTAAATATGAAGTGGAACTTGATTCTCCTAGAAAAATCATCCCATCT
CCTGGAAAGGAACACTTTGAACGTGTTTTGGAAGAATATTCACATCAAGTCAAAGATTTACAGAGAAGAC
TAAATGAAAGCAATGAATTGCATGAGAAACAAAAGTTTTATTTGAGGCAGTCAGTCATTGATTTGCAAAC
AAAACTTCAGGAGATGCAAATGGAGAGAGATGCTATGGCTGACATCAGACGAAGGGAGAGTCAGTCCCAG
GAGGATTTAAGAAATCAGCTTCAAAATACAGTTCATGAACTTGAAGCTGCCAAATGCCTTAAAGAGGACA
TGCTGAAAGACAGCAACACACAGATAGAGCAACTACGAAAAATGATGCTTAGTCATGAGGGAGTGCTTCA
AGAAATCCGGTCAATCCTAGTTGACTTTGAAGAAGCCTCAGGCAAAAAAATATGTGAACATGACAGCATG
TCTACTCTGCACTTCCGCAGCTTGGGCTCAGCTATTAGTAAAATACTAAGAGAATTAGACACAGAGATTT
CTTATCTTAAAGGGAGGATATTTCCAGTAGAGGATCAACTTGAAGCACTGAAATCTGAATCACAGAACAA
AATAGAACTACTTCTGCAACAACACCAAGATAGGATTGAGCAGTTAATAAGTGAACATGAAGTTGAAATA
ACAGGACTTACTGAGAAAGCTAGCAGTGCTCGAAGCCAAGCCAATAGTATCCAGAGTCAAATGGAAATCA
TTCAAGAGCAAGCAAGAAACCAAAACTCTATGTATATGCGTCAGCTCAGCGATCTGGAATCTACTGTTTC
TCAGCTACGTTCTGAATTAAGGGAAGCCAAAAGGATGTATGAAGACAAGACAGAAGAGCTGGAAAAGCAG
TTAGTCCTTGCCAACTCAGAGCTAACTGAAGCCCGGACAGAGCGTGATCAATTCAGTCAGGAATCTGGAA
ATTTAGATGATCAACTTCAAAAGCTGTTGGCTGATCTACACAAAAGGGAGAAGGAGCTGAGTCTGGAGAA
GGAGCAGAATAAGCGTCTGTGGGACCGAGACACAGGCAACAGCATCACCATTGACCACCTGCGGCGGGAA
CTGGACAACCGGAACATGGAGGTGCAGCGCCTGGAAGCCCTGCTCAAGGCCTTGAAGAGCGAGTGTCAGG
GCCAGATGGAGCGGCAGATGGCAGCAATTCAAGGAAAGAATGAAAGTCTAGAAAAAGTATCCTCCTTGAC
TGCTCAGCTTGAATCCACCAAAGAGATGCTGCGCAAAGTAGTAGAAGAGTTGACAGCCAAGAAAATGACT
CTGGAGAGCTCAGAGAGGACAATATCGGACCTGACAACTTCTCTCCAGGAAAAAGAGAGAGCCATCGAGG
CTACCAATGCAGAGATCACAAAGCTCCGCTCCCGGGTGGACTTGAAATTGCAGGAGCTGCAACACTTGAA
AAATGAAGGGGATCATCTCAGAAATGTGCAGACAGAATGTGAGGCCCTCAAACTGCAGATGACAGAGAAG
GACAAGGTGATCGAGATTCTGCGACAGCAGATTGAGAACATGACACAGCTGGTGGGCCAGCATGGACGAA
CTGCTGGAGCTATGCAAGTAGAAAAAGCTCAACTGGAGAAAGAAATTAATGATAGGCGGATGGAACTAAA
GGAACTTAAGATATTAAAAGATAAAAAAGATGCAAAGATCCGGGAGCTTGAGGCCAGAGTGAGTGACTTG
GAGCTGGAAAAGGTGAAGCTGGTGAATGCAGGCTCTGAGCGGCTCCGTGCAGTGAAGGACATCAAACAAG
AGAGAGATCAATTATTAAATGAGGTGAAAACAAGTAGGAGTGAATTAAACAATCTTTCAGAGGAGTATGA
AGTCTTAAAAAGGAATTTCCGAAACAAAAGTGAAGAAATGGAAATGACTACAAATAAGTTGAAAATGCAA
TTAAAATCTGCACAGTCTGAACTAGAACAGACAAGAAATACATTAAAGTCAATGGAAGGATCTGATGGTC
ATGCTATGAAAGTGGCAATGGGGATGCAAAAGCAAATCACAGCCAAAAGAGGTCAGATAGATGCCCTTCA
GAGCAAGATACAGTTTTTGGAAGAGGCAATGACAAATGCAAATAAGGAGAAACATTTTCTGAAAGAAGAG
AAAAGTAAACTCAGTCAGGAATTGAGTACTGTTGCCACAGAAAAAAACAAGATGGCTGGGGAGTTGGAAG
TTCTGCGATCTCAGGAACGCCGTTTGAAAGAAAAGGTTACTAATATGGAAGTGGCTCTGGATAAGGCATC
TTTGCAGTTTGCAGAATGTCAAGATATAATACAGCGTCAGGAGCAAGAATCAGTGCGCTTAAAACTTCAA
CACACTTTGGATATAAAAGAACTTCAGGGCCCTGGATACACCTCAAATTCTTCATTGAAACCACGCCTTC
TCCAGCCAGCATCTGTTACTCGTTCTCATTCTAATGTACCATCTTCGCAGTCTACAGCCAGCTTCCTGTC
TCATCACTCTACAAAAGCTAACACACTGAAGGAAGATCCAACAAGGGACCTGAAACAGCTTCTCCAAGAG
TTGAGAAGCGTGATCAATGAGGAGCCAGCTGTGTCTCTGAGCAAGACAGAGGAAGATGGAAGAACATCTC
TGGGAGCCTTAGAGGATAGGGTAAGAGATTGCATTACTGAATCCAGCCTGAGATCAGACATGTGCCATAG
AAGCAACAACTCGTTGAGGGACTCCACTGAAGGAAGCAAATCAAGTGAAACTCTTAGTAGAGAGCCAGTC
ACATTACACGCAGGAGACAGGGAAGATCCCTCTGGTTGCTTCACATTCACATCTGCAGCAAGTCCATCTG
TGAAAAACTCAGCTTCTCGTTCATTCAATTCTTCTCCTAAGAAGTCTCCAGTGCACTCACTCCTAACTAG
TTCAGTTGAAGGTTCAATAGGTTCCACATCACAGTATAGATCTGCCAAACCTATTCATTCATCTGATTCT
GTTAAAGATTCACAGTCTCCGCCAATAGAAACAACAGGAAAAACATGCAGGAAGCTTCAGAACAGACTAG
AAAGCTTGCAAACTCTGGTAGAAGATTTACAGCTGAAGAACCAAGCAATGTCTTCAATGATCAGAAATCA
AGAAAAGAGGATACAGAAAGTAAAAGACCAGGAAAAAATGTTACTAAAATGA

Translation (1113 aa):
MESKAWESNNEDLLSSSGVTSNGGSSSSFFVSSIRGTIIENTSSAGTLTQVPFFPKYEVELDSPRKIIPS
PGKEHFERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQ
EDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSM
STLHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEI
TGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQ
LVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRE
LDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMT
LESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEK
DKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDL
ELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQ
LKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEE
KSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQ
HTLDIKELQGPGYTSNSSLKPRLLQPASVTRSHSNVPSSQSTASFLSHHSTKANTLKEDPTRDLKQLLQE
LRSVINEEPAVSLSKTEEDGRTSLGALEDRVRDCITESSLRSDMCHRSNNSLRDSTEGSKSSETLSREPV
TLHAGDREDPSGCFTFTSAASPSVKNSASRSFNSSPKKSPVHSLLTSSVEGSIGSTSQYRSAKPIHSSDS
VKDSQSPPIETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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