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Report for CCDS43308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43308.1 Public Homo sapiens 5 SLC45A2 24 110 108 CCDS HistoryNCBI Gene:51151Re-query CCDS DB by CCDS ID:43308.1Re-query CCDS DB by GeneID:51151See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382102.7 ENSP00000371534.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382102.7Link to Ensembl Protein Viewer:ENSP00000371534.3Re-query CCDS DB by Nucleotide ID:ENST00000382102Re-query CCDS DB by Protein ID:ENSP00000371534
Original member Current member NCBI NM_001012509.4 NP_001012527.2 Accepted alive Link to Nucleotide Sequence:NM_001012509.4Link to Protein Sequence:NP_001012527.2Re-query CCDS DB by Nucleotide ID:NM_001012509Re-query CCDS DB by Protein ID:NP_001012527Link to BLAST:NP_001012527.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012527.2 460 Q9UMX9-4 460 100% 0 0

Chromosomal Locations for CCDS 43308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33947148 33947374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33951554 33951677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33954361 33954504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33963691 33964016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33982236 33982412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33984199 33984583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGGTAGCAACAGTGGGCAGGCTGGCCGCCACATCTATAAATCCCTAGCTGATGATGGCCCCTTTGACT
CTGTGGAGCCGCCTAAAAGACCCACCAGCAGACTCATCATGCACAGCATGGCCATGTTCGGAAGAGAGTT
CTGCTACGCGGTGGAGGCAGCGTATGTGACCCCAGTCCTGCTCAGCGTAGGTCTGCCCAGCAGCCTGTAC
AGCATTGTGTGGTTCCTCAGCCCCATCCTGGGATTCCTGCTGCAGCCCGTGGTCGGATCGGCCAGCGACC
ACTGCCGGTCCAGGTGGGGCCGCCGGAGACCCTACATCCTCACCCTGGGAGTCATGATGCTCGTGGGCAT
GGCTCTGTACCTCAATGGGGCTACTGTTGTAGCAGCTTTGATTGCTAACCCAAGGAGGAAGCTGGTTTGG
GCCATAAGTGTCACCATGATAGGTGTCGTTCTCTTTGATTTTGCTGCCGACTTCATTGATGGGCCCATCA
AAGCCTACTTATTTGATGTCTGCTCCCATCAGGACAAGGAGAAGGGCCTCCACTACCATGCCCTCTTCAC
AGGTTTTGGAGGTGCCCTGGGTTACCTTTTGGGTGCTATAGACTGGGCCCATCTGGAGCTGGGAAGACTG
TTGGGTACAGAATTCCAGGTCATGTTCTTCTTCTCTGCATTGGTGCTCACTTTGTGTTTTACTGTTCATC
TGTGCAGTATCTCTGAAGCCCCACTTACAGAGGTTGCAAAGGGCATTCCCCCACAGCAAACCCCTCAGGA
CCCTCCATTGTCATCAGATGGAATGTACGAGTATGGTTCTATCGAGAAAGTTAAAAATGGTTACGTAAAT
CCAGAGCTGGCAATGCAGGGAGCAAAAAACAAAAATCATGCTGAACAGACTCGCAGGGCAATGACATTAA
AGTCACTGCTGAGAGCACTGGTGAACATGCCTCCTCACTACCGCTACCTTTGCATCAGCCACCTCATTGG
ATGGACAGCCTTCCTGTCCAACATGCTGTTCTTCACAGATTTCATGGGCCAGATTGTGTACCGCGGGGAT
CCCTATAGTGCACACAACTCCACAGAGTTTCTCATCTACGAAAGAGGAGTCGAGGTTGGATGTTGGGGCT
TGTGCATCAACTCCGTGTTTTCCTCACTTTATTCTTACTTTCAGAAAGTTTTGGTATCCTACATTGGATT
AAAGGGTCTTTACTTCACGGGATATTTGCTGTTTGGCCTGGGGACGGGATTTATTGGGCTCTTCCCGAAT
GTCTACTCCACCCTGGTCCTGTGCAGCCTGTTTGGTGTAATGTCCAGCACCCTGTACACTGTGCCCTTTA
ACCTCATTACTGAGTACCACCGCGAGGAAGAAAAGGAGGTGTGCTGTCATTGA

Translation (460 aa):
MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLY
SIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVW
AISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYLLGAIDWAHLELGRL
LGTEFQVMFFFSALVLTLCFTVHLCSISEAPLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVN
PELAMQGAKNKNHAEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGD
PYSAHNSTEFLIYERGVEVGCWGLCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN
VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKEVCCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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