NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4335.1 Public Homo sapiens 5 GARIN3 24 110 108 CCDS HistoryNCBI Gene:153745Re-query CCDS DB by CCDS ID:4335.1Re-query CCDS DB by GeneID:153745See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302938.4 ENSP00000305596.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302938.4Link to Ensembl Protein Viewer:ENSP00000305596.4Re-query CCDS DB by Nucleotide ID:ENST00000302938Re-query CCDS DB by Protein ID:ENSP00000305596
Original member Current member NCBI NM_130899.3 NP_570969.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130899.3Link to Protein Sequence:NP_570969.2Re-query CCDS DB by Nucleotide ID:NM_130899Re-query CCDS DB by Protein ID:NP_570969Link to BLAST:NP_570969.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570969.2 605 Q8TC56 605 100% 0 0

Chromosomal Locations for CCDS 4335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 157162447 157163658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 157165563 157166168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGAGCAATGAATCTTGTTTACCTTATTACACAGCCCACAGCTACTCTTCAATGAGTGCGTTCAAAACCT
CCATGGGGGACCTGCAACGACAATTGTACAACAGAGGAGAGTACAACATTTTCAAGTATGCACCAATGTT
CGAGAGTAATTTTATTCAGATAAACAAAAAGGGAGAGGTGATTGATGTACACAACCGTGTCCGAATGGTG
ACAGTGGGCATCGTCTGCACCAGCCCCATCCTCCCACTGCCTGACGTCATGGTTCTGGCCCAACCAACTA
AAATCTGTGAACAGCATGTCAGATGGGGCCGGTTTGCCAAGGGGAGAGGTCGCAGGCCCGTCAAGACTCT
AGAGCTCACGAGACTGCTTCCCTTGAAATTTGTGAAGATCTCCATCCACGATCATGAGAAACAGCAGCTG
CGCCTGAAACTCGCCACTGGCCGTACTTTTTATCTGCAGTTGTGTCCCTCTTCTGACACACGGGAAGATC
TCTTTTGCTATTGGGAAAAACTTGTCTATCTCCTGAGGCCACCAGTAGAGAGTTACTGCAGTACCCCAAC
ACTTCTATCTGGGGACGCACCACCCGAAGACAACAAAAGCCTAGTGGCTGCAGAGCTCCACAGAGAAGGG
GATCAGAGTGAGACTGGGCTCTACAAGCCTTGTGATGTATCTGCAGCCACCTCTTCTGCTTATGCTGGGG
GAGAGGGAATCCAACATGCCTCCCACGGAACGGCTAGTGCGGCTTCTCCATCCACGAGCACTCCAGGGGC
TGCTGAAGGAGGAGCAGCAAGGACAGCAGGTGGCATGGCAGTGGCAGGAACAGCAACAGGACCTAGAACA
GATGTGGCAATAGCAGGGGCAGCAATGAGTCCTGCAACAGGTGCTATGAGCATAGCAACAACCAAATCTG
CAGGCCCAGGTCAAGTGACCACAGCGCTGGCGGGAGCAGCTATCAAAAATCCAGGAGAAAATGAATCCAG
CAAGTCCATGGCAGGTGCTGCCAACATATCCTCAGAGGGTATTAGCTTGGCCTTGGTGGGTGCTGCAAGC
ACCTCCTTGGAAGGTACTTCCACCTCGATGGCGGGGGCCGCCAGTCTCTCCCAAGACAGCAGCTTGAGTG
CGGCGTTTGCAGGCAGTATTACGACCAGCAAGTGTGCAGCAGAAAGAACTGAAGGACCAGCAGTGGGACC
CCTCATCTCCACCTTGCAAAGCGAAGGCTACATGAGTGAACGAGATGGAAGCCAGAAAGTTTCCCAGCCC
AGTGCTGAAGTCTGGAATGAAAACAAGGAAAGAAGAGAAAAGAAGGACAGACATCCCAGTAGGAAAAGTT
CTCATCACCGCAAGGCAGGTGAAAGTCACCGCAGGAGAGCGGGGGACAAGAATCAGAAAGCGTCTTCCCA
CCGGTCCGCATCTGGCCATAAAAACACGAGAGATGACAAAAAAGAAAAAGGGTACAGCAACGTAAGGGGC
AAGCGACATGGCTCCTCTCGCAAGAGCTCCACCCACAGCTCCACCAAAAAGGAGTCGAGAACAACTCAGG
AACTGGGGAAGAACCAATCTGCATCTAGCACAGGAGCTTTACAAAAGAAAGCCAGTAAGATCAGCTCTTT
TTTAAGGAGCCTCAGGGCCACTCCTGGTTCAAAAACAAGGGTCACATCACATGACAGAGAGGTAGATATC
GTGGCTAAGATGGTGGAGAAGCAAAACATAGAGGCCAAAGTGGAGAAAGCCCAGGGTGGCCAGGAGCTGG
AGATGATCAGTGGCACTATGACATCCGAGAAGACGGAGATGATCGTCTTTGAAACCAAATCCATTTAA

Translation (605 aa):
MSNESCLPYYTAHSYSSMSAFKTSMGDLQRQLYNRGEYNIFKYAPMFESNFIQINKKGEVIDVHNRVRMV
TVGIVCTSPILPLPDVMVLAQPTKICEQHVRWGRFAKGRGRRPVKTLELTRLLPLKFVKISIHDHEKQQL
RLKLATGRTFYLQLCPSSDTREDLFCYWEKLVYLLRPPVESYCSTPTLLSGDAPPEDNKSLVAAELHREG
DQSETGLYKPCDVSAATSSAYAGGEGIQHASHGTASAASPSTSTPGAAEGGAARTAGGMAVAGTATGPRT
DVAIAGAAMSPATGAMSIATTKSAGPGQVTTALAGAAIKNPGENESSKSMAGAANISSEGISLALVGAAS
TSLEGTSTSMAGAASLSQDSSLSAAFAGSITTSKCAAERTEGPAVGPLISTLQSEGYMSERDGSQKVSQP
SAEVWNENKERREKKDRHPSRKSSHHRKAGESHRRRAGDKNQKASSHRSASGHKNTRDDKKEKGYSNVRG
KRHGSSRKSSTHSSTKKESRTTQELGKNQSASSTGALQKKASKISSFLRSLRATPGSKTRVTSHDREVDI
VAKMVEKQNIEAKVEKAQGGQELEMISGTMTSEKTEMIVFETKSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH