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Report for CCDS43360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43360.1 Public Homo sapiens 5 SEPTIN8 24 110 108 CCDS HistoryNCBI Gene:23176Re-query CCDS DB by CCDS ID:43360.1Re-query CCDS DB by GeneID:23176See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43360.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296873.11 ENSP00000296873.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296873.11Link to Ensembl Protein Viewer:ENSP00000296873.7Re-query CCDS DB by Nucleotide ID:ENST00000296873Re-query CCDS DB by Protein ID:ENSP00000296873
Original member Current member NCBI NM_015146.2 NP_055961.1 Accepted alive Link to Nucleotide Sequence:NM_015146.2Link to Protein Sequence:NP_055961.1Re-query CCDS DB by Nucleotide ID:NM_015146Re-query CCDS DB by Protein ID:NP_055961Link to BLAST:NP_055961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055961.1 429 Q92599-2 429 100% 0 0

Chromosomal Locations for CCDS 43360.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132758821 132758824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132760802 132760992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132761133 132761265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132761458 132761626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132761800 132761896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132762484 132762645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132763706 132763892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132764224 132764419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132765409 132765529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132777108 132777137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGCGGCCACCGACCTGGAGCGCTTCTCGAATGCAGAGCCAGAGCCCCGGAGCCTCTCCCTGGGCGGCC
ATGTGGGTTTCGACAGCCTCCCCGACCAGCTGGTCAGCAAGTCGGTCACTCAGGGCTTCAGCTTCAACAT
CCTCTGTGTGGGGGAGACCGGCATTGGCAAATCCACACTGATGAACACACTCTTCAACACGACCTTCGAG
ACTGAGGAAGCCAGTCACCATGAGGCATGCGTGCGCCTGCGGCCCCAGACCTATGACCTCCAGGAGAGCA
ACGTGCAGCTCAAGCTGACCATTGTGGATGCCGTGGGCTTTGGGGATCAGATCAATAAGGATGAGAGTTA
CAGGCCCATAGTTGACTACATCGATGCGCAGTTTGAAAATTATCTGCAGGAGGAGCTGAAGATCCGCCGC
TCGCTCTTCGACTACCATGACACAAGGATCCACGTTTGCCTCTACTTCATCACGCCCACAGGGCACTCCC
TGAAGTCTCTAGATCTAGTGACCATGAAGAAACTAGACAGCAAGGTGAACATTATTCCCATCATCGCCAA
GGCTGACACCATCTCCAAGAGCGAGCTCCACAAGTTCAAGATCAAGATCATGGGCGAGTTGGTCAGCAAC
GGGGTCCAGATCTACCAGTTCCCCACGGATGATGAGGCTGTTGCAGAGATTAACGCAGTCATGAATGCAC
ATCTGCCCTTTGCCGTGGTGGGCAGCACCGAGGAGGTGAAGGTGGGGAACAAGCTGGTCCGAGCACGGCA
GTACCCCTGGGGAGTGGTGCAGGTGGAGAATGAGAATCACTGCGACTTCGTGAAGCTGCGGGAGATGTTG
ATCCGGGTGAACATGGAAGACCTCCGCGAGCAGACCCACAGCCGGCACTACGAGCTCTACCGGCGCTGCA
AGTTGGAGGAGATGGGCTTTCAGGACAGCGATGGTGACAGCCAGCCCTTCAGCCTACAAGAGACATACGA
GGCCAAGAGGAAGGAGTTCCTAAGTGAGCTGCAGAGGAAGGAGGAAGAGATGAGGCAGATGTTTGTCAAC
AAAGTGAAGGAGACAGAGCTGGAGCTGAAGGAGAAGGAAAGGGAGCTCCATGAGAAGTTTGAGCACCTGA
AGCGGGTCCACCAGGAGGAGAAGCGCAAGGTGGAGGAAAAGCGCCGGGAACTGGAGGAGGAGACCAACGC
CTTCAATCGCCGGAAGGCTGCGGTGGAGGCCCTGCAGTCGCAGGCCTTGCACGCCACCTCGCAGCAGCCC
CTGAGGAAGGACAAGGACAAGAAGAATTAA

Translation (429 aa):
MAATDLERFSNAEPEPRSLSLGGHVGFDSLPDQLVSKSVTQGFSFNILCVGETGIGKSTLMNTLFNTTFE
TEEASHHEACVRLRPQTYDLQESNVQLKLTIVDAVGFGDQINKDESYRPIVDYIDAQFENYLQEELKIRR
SLFDYHDTRIHVCLYFITPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADTISKSELHKFKIKIMGELVSN
GVQIYQFPTDDEAVAEINAVMNAHLPFAVVGSTEEVKVGNKLVRARQYPWGVVQVENENHCDFVKLREML
IRVNMEDLREQTHSRHYELYRRCKLEEMGFQDSDGDSQPFSLQETYEAKRKEFLSELQRKEEEMRQMFVN
KVKETELELKEKERELHEKFEHLKRVHQEEKRKVEEKRRELEEETNAFNRRKAAVEALQSQALHATSQQP
LRKDKDKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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