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Report for CCDS43377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43377.1 Public Homo sapiens 5 PRELID2 24 110 108 CCDS HistoryNCBI Gene:153768Re-query CCDS DB by CCDS ID:43377.1Re-query CCDS DB by GeneID:153768See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394450.6 ENSP00000377965.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394450.6Link to Ensembl Protein Viewer:ENSP00000377965.2Re-query CCDS DB by Nucleotide ID:ENST00000394450Re-query CCDS DB by Protein ID:ENSP00000377965
Original member Current member NCBI NM_138492.6 NP_612501.3 Accepted alive Link to Nucleotide Sequence:NM_138492.6Link to Protein Sequence:NP_612501.3Re-query CCDS DB by Nucleotide ID:NM_138492Re-query CCDS DB by Protein ID:NP_612501Link to BLAST:NP_612501.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612501.3 148 Q8N945-2 148 100% 0 0

Chromosomal Locations for CCDS 43377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 145764941 145765000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145796442 145796547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145817894 145818054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145819945 145820018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 145823077 145823122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGATAAAAATGTCATCTCAGTAAAAATCATGGAGGAAAAAAGAGATGAATCAACAGGGGTCATCTACA
GAAAGAGGATTGCAATCTGTCAGAACGTGGTTCCAGAAATTTTAAGGAAGGTGAGCATTTTGAAAGTACC
TAATATCCAATTAGAAGAGGAGTCATGGCTCAATCCTCGGGAAAGAAACATGGCCATACGGAGTCACTGC
CTTACGTGGACACAGTATGCATCCATGAAGGAAGAGTCTGTCTTCCGGGAAAGTATGGAAAACCCAAATT
GGACAGAGTTCATTCAAAGAGGCAGGATTTCAATCACAGGGGTTGGATTTCTCAACTGTGTTTTAGAAAC
TTTTGCCAGCACATTCTTACGACAGGGAGCCCAGAAGGGAATTAGAATCATGGAGATGCTGCTAAAGGAA
CAGTGTGGTGCCCCCTTAGCTGAATAA

Translation (148 aa):
MDKNVISVKIMEEKRDESTGVIYRKRIAICQNVVPEILRKVSILKVPNIQLEEESWLNPRERNMAIRSHC
LTWTQYASMKEESVFRESMENPNWTEFIQRGRISITGVGFLNCVLETFASTFLRQGAQKGIRIMEMLLKE
QCGAPLAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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