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Report for CCDS43476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43476.1 Public Homo sapiens 6 BEND6 24 110 108 CCDS HistoryNCBI Gene:221336Re-query CCDS DB by CCDS ID:43476.1Re-query CCDS DB by GeneID:221336See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370746.8 ENSP00000359782.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370746.8Link to Ensembl Protein Viewer:ENSP00000359782.3Re-query CCDS DB by Nucleotide ID:ENST00000370746Re-query CCDS DB by Protein ID:ENSP00000359782
Original member Current member NCBI NM_152731.3 NP_689944.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152731.3Link to Protein Sequence:NP_689944.2Re-query CCDS DB by Nucleotide ID:NM_152731Re-query CCDS DB by Protein ID:NP_689944Link to BLAST:NP_689944.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689944.2 279 Q5SZJ8-1 279 100% 0 0

Chromosomal Locations for CCDS 43476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56981811 56981930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56992378 56992555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57015133 57015353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57017207 57017399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57018421 57018548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGCAGAAGATCGTGCAGACAGATGAAATTACCAATACACAAGCTTTTAGAAAAGGAAAGAGGAAAAGAA
CAGAGACAATGGACTCAGAAAATGCAAATAGTGACATGGATAAAGGACAGAGAGACCCATATTCGGGAAA
TGCCTTTCTGCCTGGTGAAAGCTCCAGTGAGGATGAAGAGCCTTTAGCAGAATTGTCAAAGGAAGAATTG
TGCGCCAAAATAAAAAGCCTGAAAGAAAAACTAACAAACACCCGGAAAGAAAACAGCCGACTTCGACAGT
CTTTGGTCATGCTTCAAGTGTTACCACAAGCAGTCACCCAGTTTGAAGAATTGGTTGGTATGGCCGAGGC
TCTGCTTAAGGGTGGGGGAACCATGTCTACATCTGCATCCACCCTCTGGAGAGCAACAAACAACTCCTCG
CCAGATTCATTTGCCTCAACATGCAGTAATTCTAATTCTAACTCCAGTTCACCAGTTTCCTTAAAGCCTG
AGGAAGAGCATCAGACTGATGAGAAACAGTTCCAGATTGAAAAATGGCAGATTGCCCGTTGTAACAAGAG
CAAGCCTCAGAAGTTTATTAATGATTTAATGCAAGTACTTTACACAAATGAATACATGGCCACTCACAGC
CTGACAGGGGCAAAATCCTCTACTTCAAGGGACAAAGCTGTAAAACCAGCTATGAATCAGAATGAAGTCC
AAGAAATCATAGGAGTAACAAAACAATTATTTCCCAATACGGATGATGTTTCAATTAGGAGAATGATAGG
GCAAAAGCTAAACAACTGTACCAAGAAGCCAAATTTAAGCAAAAATCTTAACTCTCAGGATATTAAATAG

Translation (279 aa):
MQKIVQTDEITNTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEEL
CAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLKGGGTMSTSASTLWRATNNSS
PDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQIARCNKSKPQKFINDLMQVLYTNEYMATHS
LTGAKSSTSRDKAVKPAMNQNEVQEIIGVTKQLFPNTDDVSIRRMIGQKLNNCTKKPNLSKNLNSQDIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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