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Report for CCDS43561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43561.1 Public Homo sapiens 7 TAX1BP1 24 110 108 CCDS HistoryNCBI Gene:8887Re-query CCDS DB by CCDS ID:43561.1Re-query CCDS DB by GeneID:8887See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43561.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265393.10 ENSP00000265393.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265393.10Link to Ensembl Protein Viewer:ENSP00000265393.6Re-query CCDS DB by Nucleotide ID:ENST00000265393Re-query CCDS DB by Protein ID:ENSP00000265393
Original member Current member EBI ENST00000543117.5 ENSP00000444811.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543117.5Link to Ensembl Protein Viewer:ENSP00000444811.1Re-query CCDS DB by Nucleotide ID:ENST00000543117Re-query CCDS DB by Protein ID:ENSP00000444811
Original member Current member NCBI NM_001079864.3 NP_001073333.1 Accepted alive Link to Nucleotide Sequence:NM_001079864.3Link to Protein Sequence:NP_001073333.1Re-query CCDS DB by Nucleotide ID:NM_001079864Re-query CCDS DB by Protein ID:NP_001073333Link to BLAST:NP_001073333.1
Original member Current member NCBI NM_001206901.1 NP_001193830.1 Accepted alive Link to Nucleotide Sequence:NM_001206901.1Link to Protein Sequence:NP_001193830.1Re-query CCDS DB by Nucleotide ID:NM_001206901Re-query CCDS DB by Protein ID:NP_001193830Link to BLAST:NP_001193830.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073333.1 747 Q86VP1-2 747 100% 0 0
NP_001193830.1 747 Q86VP1-2 747 100% 0 0

Chromosomal Locations for CCDS 43561.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27748525 27748686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27758031 27758133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27765834 27766021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27769676 27769834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27785163 27785311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27785399 27785489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27787418 27787603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27792006 27792230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27793066 27793212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27794323 27794446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27796116 27796219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27799965 27800090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27816349 27816394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27816890 27817038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27827738 27827820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27828628 27828829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGACATCCTTTCAAGAAGTCCCATTGCAGACTTCCAACTTTGCCCATGTCATCTTTCAAAATGTGGCCA
AGAGTTACCTTCCTAATGCACACCTGGAATGTCATTACACCTTAACTCCATATATTCATCCACATCCAAA
AGATTGGGTTGGTATATTCAAGGTTGGATGGAGTACTGCTCGTGATTATTACACGTTTTTATGGTCCCCT
ATGCCTGAACATTATGTGGAAGGATCAACAGTCAATTGTGTACTAGCATTCCAAGGATATTACCTTCCAA
ATGATGATGGAGAATTTTATCAGTTCTGTTACGTTACCCATAAGGGTGAAATTCGTGGAGCAAGTACACC
TTTCCAGTTTCGAGCTTCTTCTCCAGTTGAAGAGCTGCTTACTATGGAAGATGAAGGAAATTCTGACATG
TTAGTGGTGACCACAAAAGCAGGCCTTCTTGAGTTGAAAATTGAGAAAACCATGAAAGAAAAAGAAGAAC
TGTTAAAGTTAATTGCCGTTCTGGAAAAAGAAACAGCACAACTTCGAGAACAAGTTGGGAGAATGGAAAG
AGAACTTAACCATGAGAAAGAAAGATGTGACCAACTGCAAGCAGAACAAAAGGGTCTTACTGAAGTAACA
CAAAGCTTAAAAATGGAAAATGAAGAGTTTAAGAAGAGGTTCAGTGATGCTACATCCAAAGCCCATCAGC
TTGAGGAAGATATTGTGTCAGTAACACATAAAGCAATTGAAAAAGAAACCGAATTAGACAGTTTAAAGGA
CAAACTCAAGAAGGCACAACATGAAAGAGAACAACTTGAATGTCAGTTGAAGACAGAGAAGGATGAAAAG
GAACTTTATAAGGTACATTTGAAGAATACAGAAATAGAAAATACCAAGCTTATGTCAGAGGTCCAGACTT
TAAAAAATTTAGATGGGAACAAAGAAAGCGTGATTACTCATTTCAAAGAAGAGATTGGCAGGCTGCAGTT
ATGTTTGGCTGAAAAGGAAAATCTGCAAAGAACTTTCCTGCTTACAACCTCAAGTAAAGAAGATACTTGT
TTTTTAAAGGAGCAACTTCGTAAAGCAGAGGAACAGGTTCAGGCAACTCGGCAAGAAGTTGTCTTTCTGG
CTAAAGAACTCAGTGATGCTGTCAACGTACGAGACAGAACGATGGCAGACCTGCATACTGCACGCTTGGA
AAACGAGAAAGTGAAAAAGCAGTTAGCTGATGCAGTGGCAGAACTTAAACTAAATGCTATGAAAAAAGAT
CAGGACAAGACTGATACACTGGAACACGAACTAAGAAGAGAAGTTGAAGATCTGAAACTCCGTCTTCAGA
TGGCTGCAGACCATTATAAAGAAAAATTTAAGGAATGCCAAAGGCTCCAAAAACAAATAAACAAACTTTC
AGATCAATCAGCTAATAATAATAATGTCTTCACAAAGAAAACGGGGAATCAGCAGAAAGTGAATGATGCT
TCAGTAAACACAGACCCAGCCACTTCTGCCTCTACTGTAGATGTAAAGCCATCACCTTCTGCAGCAGAGG
CAGATTTTGACATAGTAACAAAGGGGCAAGTCTGTGAAATGACCAAAGAAATTGCTGACAAAACAGAAAA
GTATAATAAATGTAAACAACTCTTGCAGGATGAGAAAGCAAAATGCAATAAATATGCTGATGAACTTGCA
AAAATGGAGCTGAAATGGAAAGAACAAGTGAAAATTGCTGAAAATGTAAAACTTGAACTAGCTGAAGTAC
AGGACAATTATAAAGAACTTAAAAGGAGTCTAGAAAATCCAGCAGAAAGGAAAATGGAAGATGGAGCAGA
TGGTGCTTTTTACCCAGATGAAATACAAAGGCCACCTGTCAGAGTCCCCTCTTGGGGACTGGAAGACAAT
GTTGTCTGCAGCCAGCCTGCTCGAAACTTTAGTCGGCCTGATGGCTTAGAGGACTCTGAGGATAGCAAAG
AAGATGAGAATGTGCCTACTGCTCCTGATCCTCCAAGTCAACATTTACGTGGGCATGGGACAGGCTTTTG
CTTTGATTCCAGCTTTGATGTTCACAAGAAGTGTCCCCTCTGTGAGTTAATGTTTCCTCCTAACTATGAT
CAGAGCAAATTTGAAGAACATGTTGAAAGTCACTGGAAGGTGTGCCCGATGTGCAGCGAGCAGTTCCCTC
CTGACTATGACCAGCAGGTGTTTGAAAGGCATGTGCAGACCCATTTTGATCAGAATGTTCTAAATTTTGA
CTAG

Translation (747 aa):
MTSFQEVPLQTSNFAHVIFQNVAKSYLPNAHLECHYTLTPYIHPHPKDWVGIFKVGWSTARDYYTFLWSP
MPEHYVEGSTVNCVLAFQGYYLPNDDGEFYQFCYVTHKGEIRGASTPFQFRASSPVEELLTMEDEGNSDM
LVVTTKAGLLELKIEKTMKEKEELLKLIAVLEKETAQLREQVGRMERELNHEKERCDQLQAEQKGLTEVT
QSLKMENEEFKKRFSDATSKAHQLEEDIVSVTHKAIEKETELDSLKDKLKKAQHEREQLECQLKTEKDEK
ELYKVHLKNTEIENTKLMSEVQTLKNLDGNKESVITHFKEEIGRLQLCLAEKENLQRTFLLTTSSKEDTC
FLKEQLRKAEEQVQATRQEVVFLAKELSDAVNVRDRTMADLHTARLENEKVKKQLADAVAELKLNAMKKD
QDKTDTLEHELRREVEDLKLRLQMAADHYKEKFKECQRLQKQINKLSDQSANNNNVFTKKTGNQQKVNDA
SVNTDPATSASTVDVKPSPSAAEADFDIVTKGQVCEMTKEIADKTEKYNKCKQLLQDEKAKCNKYADELA
KMELKWKEQVKIAENVKLELAEVQDNYKELKRSLENPAERKMEDGADGAFYPDEIQRPPVRVPSWGLEDN
VVCSQPARNFSRPDGLEDSEDSKEDENVPTAPDPPSQHLRGHGTGFCFDSSFDVHKKCPLCELMFPPNYD
QSKFEEHVESHWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVLNFD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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