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Report for CCDS43566.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
43566.1 |
Public |
Homo sapiens |
7 |
BBS9 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:27241](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:43566.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:27241](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 43566.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000242067.11 |
ENSP00000242067.6 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000242067.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000242067.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000242067](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000242067](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001348036.1 |
NP_001334965.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001348036.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001334965.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001348036](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001334965](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001334965.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_198428.3 |
NP_940820.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_198428.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_940820.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_198428](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_940820](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_940820.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 43566.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2664 nt): ATGTCTTTATTTAAAGCCCGTGATTGGTGGTCTACTATTCTGGGAGATAAAGAAGAATTTGATCAAGGCT GTTTGTGTCTGGCTAATGTTGACAATAGTGGAAATGGACAAGATAAAATAATTGTGGGTAGCTTTATGGG ATACCTAAGGATCTTTAGCCCCCATCCTGCAAAAACAGGAGATGGAGCTCAAGCCGAAGATTTGCTTCTA GAAGTGGATCTACGAGATCCAGTACTTCAAGTGGAAGTAGGAAAGTTTGTTTCAGGTACCGAAATGCTAC ATTTGGCTGTGTTACATTCTAGAAAACTTTGTGTCTACTCTGTCTCAGGAACCTTGGGTAATGTGGAACA TGGGAACCAATGTCAGATGAAATTGATGTATGAACATAATCTTCAGAGAACAGCCTGCAATATGACCTAT GGATCATTTGGTGGTGTAAAAGGTCGAGATTTAATTTGCATCCAGTCTATGGATGGGATGCTGATGGTAT TTGAGCAGGAGAGCTATGCTTTTGGAAGATTTCTCCCTGGCTTTCTTCTGCCTGGTCCTCTTGCCTACAG TTCCCGTACAGATTCCTTCCTTACTGTCTCTTCCTGCCAACAAGTGGAAAGTTATAAGTACCAGGTACTT GCTTTTGCAACAGATGCAGATAAAAGGCAGGAGACTGAACAGCAAAAACTTGGTTCTGGAAAAAGACTAG TTGTGGATTGGACTCTAAATATTGGAGAGCAAGCCCTTGACATATGTATTGTCTCTTTCAATCAGTCGGC ATCCTCTGTTTTTGTTCTTGGTGAGAGAAACTTTTTTTGCCTTAAGGATAATGGACAAATTCGATTCATG AAGAAGCTTGATTGGAGCCCAAGTTGTTTTCTGCCATATTGCTCAGTTTCTGAAGGAACAATAAATACTT TGATTGGAAATCATAATAACATGCTGCATATTTATCAAGATGTGACACTGAAGTGGGCCACCCAACTTCC CCACATTCCTGTAGCAGTAAGAGTGGGCTGTTTGCATGATTTAAAGGGAGTGATAGTCACTCTGAGTGAT GATGGTCACTTGCAGTGTTCATACCTGGGGACAGATCCTTCTCTGTTCCAAGCTCCAAACGTTCAATCTC GAGAACTAAACTATGATGAACTTGATGTAGAAATGAAAGAACTTCAGAAAATCATCAAAGATGTTAACAA ATCACAAGGTGTTTGGCCCATGACTGAGAGAGAAGATGACTTGAACGTTTCTGTCGTGGTTTCTCCTAAC TTTGATTCAGTTTCTCAAGCGACCGATGTTGAGGTGGGAACTGACCTTGTCCCTTCTGTCACGGTGAAGG TCACACTGCAGAACAGAGTGATATTGCAAAAAGCCAAATTATCAGTCTACGTGCAACCACCATTAGAATT GACTTGTGATCAGTTCACCTTTGAATTTATGACACCAGATTTGACTAGAACAGTAAGCTTTTCTGTTTAT CTGAAAAGAAGTTATACACCATCAGAATTGGAAGGAAATGCTGTTGTTTCTTATTCCAGACCAACAGATC GAAATCCTGATGGCATTCCGCGAGTTATCCAATGTAAATTTAGACTTCCCCTAAAGTTAATTTGCCTACC AGGTCAGCCTTCAAAAACTGCAAGCCACAAAATTACTATTGATACCAACAAATCTCCAGTCAGTCTTCTT AGTCTCTTCCCAGGTTTTGCCAGTCAGTCAGATGATGATCAGGTGAATGTAATGGGTTTTCACTTCTTAG GAGGTGCTCGAATTACTGTTCTTGCTTCCAAAACTTCTCAACGATATCGCATTCAGAGTGAACAATTTGA AGATCTTTGGCTCATAACCAATGAGCTTATTCTTCGCCTTCAAGAATATTTTGAAAAACAGGGAGTCAAA GATTTTGCATGTTCTTTTTCGGGATCTATACCCCTTCAAGAATATTTTGAGTTGATTGATCATCATTTTG AGCTACGGATAAATGGTGAAAAATTAGAAGAACTCTTATCTGAGAGAGCTGTACAATTTCGGGCCATTCA ACGCCGGCTACTAGCAAGATTCAAAGATAAAACTCCTGCCCCTCTTCAACACCTGGACACCTTGTTAGAT GGAACCTACAAGCAGGTAATTGCTCTAGCAGATGCAGTGGAGGAAAACCAAGGCAATCTGTTCCAGTCAT TCACCAGGCTGAAGAGTGCCACCCATTTGGTGATTCTGCTGATCGCGCTGTGGCAGAAGCTTAGTGCTGA CCAGGTTGCTATTCTGGAAGCGGCATTTCTGCCGCTACAAGAAGACACTCAAGAATTGGGCTGGGAAGAA ACGGTGGATGCCGCCATTTCCCACCTGTTGAAGACTTGCCTGTCGAAGAGTTCTAAGGAGCAGGCTTTGA ACCTCAACAGCCAGCTGAACATACCCAAAGACACAAGCCAACTGAAGAAACATATCACCTTGCTCTGCGA TAGATTATCCAAAGGTGGCCGTCTCTGCCTAAGTACCGATGCAGCAGCCCCACAGACCATGGTCATGCCA GGTGGTTGTACTACAATCCCAGAGTCAGACCTAGAAGAAAGATCAGTAGAACAAGACTCTACAGAACTGT TTACCAACCACAGACATCTCACTGCAGAGACACCCAGGCCTGAAGTTTCACCCCTCCAAGGAGTCTCGGA ATAA
Translation (887 aa): MSLFKARDWWSTILGDKEEFDQGCLCLANVDNSGNGQDKIIVGSFMGYLRIFSPHPAKTGDGAQAEDLLL EVDLRDPVLQVEVGKFVSGTEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQCQMKLMYEHNLQRTACNMTY GSFGGVKGRDLICIQSMDGMLMVFEQESYAFGRFLPGFLLPGPLAYSSRTDSFLTVSSCQQVESYKYQVL AFATDADKRQETEQQKLGSGKRLVVDWTLNIGEQALDICIVSFNQSASSVFVLGERNFFCLKDNGQIRFM KKLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQDVTLKWATQLPHIPVAVRVGCLHDLKGVIVTLSD DGHLQCSYLGTDPSLFQAPNVQSRELNYDELDVEMKELQKIIKDVNKSQGVWPMTEREDDLNVSVVVSPN FDSVSQATDVEVGTDLVPSVTVKVTLQNRVILQKAKLSVYVQPPLELTCDQFTFEFMTPDLTRTVSFSVY LKRSYTPSELEGNAVVSYSRPTDRNPDGIPRVIQCKFRLPLKLICLPGQPSKTASHKITIDTNKSPVSLL SLFPGFASQSDDDQVNVMGFHFLGGARITVLASKTSQRYRIQSEQFEDLWLITNELILRLQEYFEKQGVK DFACSFSGSIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLARFKDKTPAPLQHLDTLLD GTYKQVIALADAVEENQGNLFQSFTRLKSATHLVILLIALWQKLSADQVAILEAAFLPLQEDTQELGWEE TVDAAISHLLKTCLSKSSKEQALNLNSQLNIPKDTSQLKKHITLLCDRLSKGGRLCLSTDAAAPQTMVMP GGCTTIPESDLEERSVEQDSTELFTNHRHLTAETPRPEVSPLQGVSE
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