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Report for CCDS4372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4372.1 Public Homo sapiens 5 FOXI1 24 110 108 CCDS HistoryNCBI Gene:2299Re-query CCDS DB by CCDS ID:4372.1Re-query CCDS DB by GeneID:2299See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4372.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306268.8 ENSP00000304286.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306268.8Link to Ensembl Protein Viewer:ENSP00000304286.5Re-query CCDS DB by Nucleotide ID:ENST00000306268Re-query CCDS DB by Protein ID:ENSP00000304286
Original member Current member NCBI NM_012188.5 NP_036320.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012188.5Link to Protein Sequence:NP_036320.2Re-query CCDS DB by Nucleotide ID:NM_012188Re-query CCDS DB by Protein ID:NP_036320Link to BLAST:NP_036320.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036320.2 378 Q12951-1 378 100% 0 0

Chromosomal Locations for CCDS 4372.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 170105958 170106531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 170108049 170108611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGAGCTCCTTCGACCTGCCGGCGCCCTCCCCACCTCGCTGCAGCCCCCAGTTCCCCAGCATCGGCCAGG
AGCCCCCCGAGATGAACCTCTACTATGAGAACTTCTTCCACCCACAGGGCGTGCCCAGCCCTCAGCGGCC
CTCCTTCGAGGGGGGCGGCGAGTATGGGGCCACCCCCAACCCCTACCTCTGGTTCAACGGGCCCACCATG
ACCCCGCCACCCTACCTGCCCGGCCCCAACGCCAGCCCCTTCCTGCCCCAGGCCTATGGAGTGCAGAGGC
CGCTGCTGCCCAGCGTGTCGGGGCTTGGGGGGAGCGACCTGGGCTGGCTGCCCATCCCCTCGCAGGAGGA
GCTGATGAAGCTGGTGCGGCCACCCTATTCCTACTCGGCTCTCATCGCCATGGCCATCCACGGGGCACCC
GACAAGCGCCTCACTCTCAGCCAGATCTACCAGTACGTGGCCGACAACTTCCCCTTCTACAACAAGAGCA
AGGCCGGCTGGCAGAACTCCATCCGCCACAACCTGTCGCTCAACGACTGCTTCAAGAAGGTGCCCCGCGA
CGAGGACGACCCGGGCAAAGGGAATTACTGGACCCTGGACCCCAACTGTGAGAAAATGTTCGACAATGGA
AATTTCCGCAGGAAAAGGAAGAGAAAATCAGATGTTTCCTCTAGCACAGCCTCCTTGGCCTTAGAGAAGA
CAGAGAGCAGTCTCCCGGTGGACAGCCCCAAGACCACGGAGCCTCAGGACATCTTGGATGGAGCCTCACC
AGGGGGCACCACCAGCTCCCCAGAGAAGCGGCCCTCCCCTCCCCCATCAGGCGCCCCTTGCCTTAACAGC
TTCCTTTCCTCTATGACAGCCTATGTGAGCGGGGGGAGCCCCACGAGCCACCCCTTGGTCACACCAGGAC
TGAGCCCTGAGCCCAGTGACAAGACGGGGCAGAACTCACTGACCTTCAACTCCTTCTCCCCGCTCACCAA
CCTCAGCAACCACAGCGGTGGGGGTGACTGGGCGAACCCCATGCCCACCAACATGCTCAGCTATGGAGGA
TCTGTGCTCAGCCAATTCAGCCCTCACTTCTACAACAGTGTCAACACCAGTGGTGTCCTCTACCCCAGGG
AGGGCACCGAGGTCTAG

Translation (378 aa):
MSSFDLPAPSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPNPYLWFNGPTM
TPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAP
DKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNG
NFRRKRKRKSDVSSSTASLALEKTESSLPVDSPKTTEPQDILDGASPGGTTSSPEKRPSPPPSGAPCLNS
FLSSMTAYVSGGSPTSHPLVTPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGG
SVLSQFSPHFYNSVNTSGVLYPREGTEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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