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Report for CCDS43876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43876.1 Public Homo sapiens 9 WDR38 24 110 108 CCDS HistoryNCBI Gene:401551Re-query CCDS DB by CCDS ID:43876.1Re-query CCDS DB by GeneID:401551See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43876.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373574.2 ENSP00000362677.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373574.2Link to Ensembl Protein Viewer:ENSP00000362677.1Re-query CCDS DB by Nucleotide ID:ENST00000373574Re-query CCDS DB by Protein ID:ENSP00000362677
Original member Current member NCBI NM_001045476.3 NP_001038941.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001045476.3Link to Protein Sequence:NP_001038941.1Re-query CCDS DB by Nucleotide ID:NM_001045476Re-query CCDS DB by Protein ID:NP_001038941Link to BLAST:NP_001038941.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038941.1 314 Q5JTN6 314 100% 0 0

Chromosomal Locations for CCDS 43876.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 124853532 124853600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124854205 124854325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124855634 124855750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124855861 124855958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124856240 124856320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124856469 124856600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124856732 124856881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124857364 124857411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124857502 124857630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAACAGCGGGGTCCCGGCCACGCTGGCCGTGCGGAGAGTGAAATTCTTCGGCCAGCACGGCGGGGAGG
TCAACTCTTCTGCCTTCTCCCCTGATGGCCAGATGCTGCTCACAGGCTCAGAAGATGGCTGCGTGTATGG
CTGGGAGACCCGGAGTGGGCAGCTGCTGTGGAGGCTGGGTGGCCACACAGGCCCCGTGAAGTTCTGCCGC
TTCTCCCCTGATGGCCACCTCTTCGCCAGCGCCTCCTGTGACTGCACTGTCCGCCTGTGGGATGTGGCAA
GAGCGAAGTGTCTGCGGGTCCTGAAGGGTCACCAACGGAGTGTGGAGACGGTCAGCTTCAGCCCTGACTC
GAGACAGCTGGCATCAGGTGGCTGGGACAAGCGGGTGATGCTCTGGGATGTGCAGTCCGGCCAGATGCTG
CGCCTCTTAGTTGGGCACCGTGACTCCATCCAGAGCAGCGACTTCTCACCCACGGTGAACTGCCTGGCCA
CCGGCTCCTGGGACTCCACCGTACACATCTGGGACCTGCGGATGGTGACCCCAGCAGTCTCCCACCAGGC
GCTAGAGGGACACAGTGCCAACATCAGCTGCCTGTGCTATTCAGCATCCGGCCTCCTGGCATCCGGCTCC
TGGGACAAGACCATCCACATCTGGAAGCCCACAACCAGCAGCCTGCTTATCCAACTGAAGGGCCATGTCA
CCTGGGTGAAGAGCATAGCCTTCTCTCCCGACGAGCTGTGGCTGGCCAGCGCCGGCTATTCCCGCATGGT
CAAAGTCTGGGACTGCAACACAGGAAAGTGCCTTGAGACCCTGAAGGGAGTCCTGGATGTGGCCCACACC
TGTGCCTTCACCCCAGATGGGAAAATCTTAGTGTCTGGAGCTGCCGATCAGACTAGACGTCAAATATCCC
GCACGTCCAAATCACCCAGGGACCCTCAAACCTAA

Translation (314 aa):
MNSGVPATLAVRRVKFFGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCR
FSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQML
RLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGS
WDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLKGVLDVAHT
CAFTPDGKILVSGAADQTRRQISRTSKSPRDPQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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