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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS4398.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
4398.2 |
Public |
Homo sapiens |
5 |
SIMC1 |
24 |
110 |
108 |
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Public Note for CCDS 4398.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data. The update is based on the coding sequence of BC066980.1, which lacks an exon in the 5' coding region. A longer variant containing this exon, as represented in SwissProt Q8NDZ2.1, may also be possible, but this has no full-length transcript support to enable current CCDS representation. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 4398.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000341199.10 |
ENSP00000342075.6 |
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Accepted |
alive |
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EBI |
ENST00000430704.6 |
ENSP00000409287.2 |
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Accepted |
alive |
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NCBI |
NM_198567.6 |
NP_940969.3 |
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Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_940969.3 |
457 |
Q8NDZ2-3 |
457 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 4398.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1374 nt): ATGGAGGATTTCATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGT CGCGGAGGCCGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGCTGCCCCGCCGGACCGTGAACAAGGGTCA AAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTAACAAATACCATTGAAGAGAATTTTCCTCTG GGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCAAGAGAAATCGTGGCTCACA TCATCCAGAAAATCTTGCTCAGTGGCTCTGAGACTGTGGATGTCCTAAAGGAGGCCTACATGCTTCTCAT GAAAATTCAACAGCTACATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTC ATGGAGGAAGAGGGACAAACTCTGCCTGGGCGAGTCCTTTTCCTGCGTTATGTCGTTCAGACCCTAGAAG ATGACTTTCAGCAGACCCTGAGGAGGCAACGGCAGCACCTGCAGCAATCCATTGCAAACATGGTGCTTTC CTGTGACAAGCAGCCCCACAATGTCAGGGATGTTATCAAGTGGCTGGTCAAAGCAGTAACTGAAGATGGA TTGACTCAGCCCCCAAATGGAAATCAAACGTCTTCAGGAACAGGAATCTTGAAAGCCAGCAGTAGCCACC CTTCTTCCCAGCCCAACCTGACAAAGAACACCAATCAGCTGATTGTGTGCCAGCTTCAGAGGATGCTCTC CATAGCCGTAGAGGTGGACAGGACCCCCACCTGCAGCTCCAATAAAATTGCCGAGATGATGTTTGGGTTT GTGCTGGACATTCCTGAGAGGAGCCAGAGAGAAATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGCT GCAAAGTGTTAGAAATCATATTCCTCCACAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCCA GGCCCTCTACTTTCTGAATAATTCTACGTCACTGCTCAAGTGTCAGTCAGATAAAAGCCAGTGGCAGACT TGGGACGAATTGGTTGAGCATCTGCAGTTTCTGCTGTCCAGTTATCAACATGTTTTAAGAGAACACTTAA GGAGTTCCGTGATCGACCGAAAGGACTTAATAATCAAAAGGATTAAGCCCAAACCCCAGCAAGGAGATGA CATCACAGTGGTAGACGTAGAGAAGCAGATTGAGGCCTTCCGCAGCCGCCTGATCCAGATGCTGGGGGAG CCTCTTGTCCCCCAACTCCAAGACAAAGTGCACTTGTTGAAGCTCCTGCTCTTCTATGCTGCGGACTTGA ACCCTGATGCAGAGCCCTTTCAAAAGGGCTGGAGCGGCTCCTGA
Translation (457 aa): MEDFIVISDDSGSESSGGARPGRSRRPRRALSRTSGALPRRTVNKGQKLEPIPHRRLRMVTNTIEENFPL GTVQFLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLTYV MEEEGQTLPGRVLFLRYVVQTLEDDFQQTLRRQRQHLQQSIANMVLSCDKQPHNVRDVIKWLVKAVTEDG LTQPPNGNQTSSGTGILKASSSHPSSQPNLTKNTNQLIVCQLQRMLSIAVEVDRTPTCSSNKIAEMMFGF VLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALYFLNNSTSLLKCQSDKSQWQT WDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQGDDITVVDVEKQIEAFRSRLIQMLGE PLVPQLQDKVHLLKLLLFYAADLNPDAEPFQKGWSGS
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