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Report for CCDS44039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44039.1 Public Homo sapiens 1 ATAD3C 24 110 108 CCDS HistoryNCBI Gene:219293Re-query CCDS DB by CCDS ID:44039.1Re-query CCDS DB by GeneID:219293See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44039.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378785.7 ENSP00000368062.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378785.7Link to Ensembl Protein Viewer:ENSP00000368062.2Re-query CCDS DB by Nucleotide ID:ENST00000378785Re-query CCDS DB by Protein ID:ENSP00000368062
Original member Current member NCBI NM_001039211.3 NP_001034300.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039211.3Link to Protein Sequence:NP_001034300.2Re-query CCDS DB by Nucleotide ID:NM_001039211Re-query CCDS DB by Protein ID:NP_001034300Link to BLAST:NP_001034300.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034300.2 411 Q5T2N8 411 100% 0 0

Chromosomal Locations for CCDS 44039.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 1450684 1450758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1452046 1452122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1452365 1452434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1454345 1454500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1455460 1455519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1455791 1455916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1456225 1456349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1457129 1457180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1459161 1459231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1460750 1460917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1462600 1462708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 1468384 1468530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGTCAAAGGACGCCCTGAATCTGGCGCAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGC
TCAAACAACTTGTCAATGAGGATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCACCATCAGACCTTCTT
GGAGTCCATCAGGGCGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAA
GTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGCCG
TCACTGGCCGCTACATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGT
GCTTGAGGCGCTGCGGCACCCCATCCAGCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTG
GAGGGTGTTGTGCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAATGACAAGGAACATCA
AGAAGAACCGGGGCCTGTACAGGCACATCCTGCTGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGC
CAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGG
CGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGCCTCCTGCTCT
TTGTGGATGAAGCGGACGCCTTCCTTCGGAAGCGAGCCACTGAGAAGATAAGCGAGGACCTCAGGGCCAC
ACTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAAATTCATGCTGATCCTGGCCAGCTGCCAC
CCCGAGCAGTTCGACTGGGCCATCAATGCCTGCATCGACGTGATGGTCCACTTCGACCTGCCAGGGCAGG
AGGAGCGGGCGCGCCTGGTGAGAATGTATCTTAACGAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCG
GCGTCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTTAGAGATCGCTCGGCTGACAGAGGGCATG
TCATGCCGGAAGATCGCACAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCAAGGACGGGGTCC
TGACCGAGGCCATGATGGACGCCTGCGTGCAAGACTTTGTCCAGCAGCACCAGCAGATGATGCGCTGGCT
GAAGGGGGAGAGGCCTGGGCCCGAGGACGAGCAACCCTCATCCTGA

Translation (411 aa):
MSKDALNLAQMQEQTLQLEQQSKLKQLVNEDLRKQEESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDK
VTATVAGLTLLAVGVYSAKNATAVTGRYIEARLGKPSLVRETSRITVLEALRHPIQQVSRRLLSRPQDVL
EGVVLSPSLEARVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMG
REGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLILASCH
PEQFDWAINACIDVMVHFDLPGQEERARLVRMYLNEYVLKPATEGKRRLKLAQFDYGRKCLEIARLTEGM
SCRKIAQLAVSWQATAYASKDGVLTEAMMDACVQDFVQQHQQMMRWLKGERPGPEDEQPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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