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Report for CCDS44429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44429.1 Public Homo sapiens 10 CDH23 24 110 108 CCDS HistoryNCBI Gene:64072Re-query CCDS DB by CCDS ID:44429.1Re-query CCDS DB by GeneID:64072See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 44429.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000461841.7 ENSP00000473454.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461841.7Link to Ensembl Protein Viewer:ENSP00000473454.2Re-query CCDS DB by Nucleotide ID:ENST00000461841Re-query CCDS DB by Protein ID:ENSP00000473454
Original member Current member NCBI NM_052836.4 NP_443068.1 Accepted alive Link to Nucleotide Sequence:NM_052836.4Link to Protein Sequence:NP_443068.1Re-query CCDS DB by Nucleotide ID:NM_052836Re-query CCDS DB by Protein ID:NP_443068Link to BLAST:NP_443068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443068.1 530 Q9H251-5 530 100% 0 0

Chromosomal Locations for CCDS 44429.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 71439832 71439898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71446318 71446395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71510082 71510224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71510954 71511001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71511120 71511212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71566742 71566936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71570790 71570918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71577914 71577992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71615504 71615616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71617205 71617393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71643861 71643866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71645831 71645980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71646459 71646761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGGGCGCCATGTTGCCACCAGCTGCCACGTGGCCTGGCTTTTGGTGCTGATCTCTGGATGCTGGGGCC
AGGTGAACCGGCTGCCCTTCTTCACCAACCACTTCTTTGATACATACCTGCTGATCAGCGAGGACACGCC
TGTGGGTTCTTCTGTGACCCAGTTGCTGGCCCAAGACATGGACAATGACCCCCTGGTGTTTGGCGTGTCT
GGGGAGGAGGCCTCTCGCTTCTTTGCAGTGGAGCCTGACACTGGCGTGGTGTGGCTCCGGCAGCCACTGG
ACAGAGAGACCAAGTCAGAGTTCACCGTGGAGTTCTCTGTCAGCGACCACCAGGGGGTGATCACACGGAA
GGTGAACATCCAGGTTGGGGATGTGAATGACAACGCGCCCACATTTCACAATCAGCCCTACAGCGTCCGC
ATCCCTGAGAATACACCAGTGGGGACGCCCATCTTCATCGTGAATGCCACAGACCCCGACTTGGGGGCAG
GGGGCAGCGTCCTCTACTCCTTCCAGCCCCCCTCCCAATTCTTCGCCATTGACAGCGCCCGCGGTATCGT
CACAGTGATCCGGGAGCTGGACTACGAGACCACACAGGCCTACCAGCTCACGGTCAACGCCACAGATCAA
GACAAGACCAGGCCTCTGTCCACCCTGGCCAACTTGGCCATCATCATCACAGATGTCCAGGACATGGACC
CCATCTTCATCAACCTGCCTTACAGCACCAACATCTACGAGCATTCTCCTCCGGGCACGACGGTGCGCAT
CATCACCGCCATAGACCAGGATAAAGGACGTCCCCGGGGCATTGGCTACACCATCGTTTCAGGGAATACC
AACAGCATCTTTGCCCTGGACTACATCAGCGGAGTGCTGACCTTGAATGGCCTGCTGGACCGGGAGAACC
CCCTGTACAGCCATGGCTTCATCCTGACTGTGAAGGGCACGGAGCTGAACGATGACCGCACCCCATCTGA
CGCTACAGTCACCACGACCTTCAATATCCTGGTTATTGACATCAATGACAATGCCCCGGAGTTCAACAGC
TCCGAGTACAGCGTGGCCATCACTGAGCTGGCACAGGTCGGCTTTGCCCTTCCACTCTTCATCCAGGTGG
TGGACAAGGATGAGAATTTGGGCCTGAACAGCATGTTTGAGGTGTACTTGGTGGGGAACAACTCCCACCA
CTTCATCATCTCCCCGACCTCCGTCCAGGGGAAGGCGGACATTCGTATTCGGGTGGCCATCCCACTGGAC
TACGAGACCGTGGACCGCTACGACTTTGATCTCTTTGCCAATGAGAGTGTGCCTGACCATGTGGGCTATG
CCAAGGTGAAGATCACTCTCATCAATGAAAATGACAACCGGCCCATCTTCAGCCAGCCACTGTACAACAT
CAGCCTGTACGAGAACGTCACCGTGGGGACCTCTGTGCTGACAGTCCTGGTGAGTCCCCGCTTCACTGCA
GGGCCACTGAGCTCTCCAGGGCCGACTGTGGTGAGGCACCCAGAGGGATTTTGTCCAAGGGACCTCAGCA
ATCAGGGAAGGAGGCACCCCCAAATCCCTGAGCTGTGTTTGTTGGTGTATTAA

Translation (530 aa):
MGRHVATSCHVAWLLVLISGCWGQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLAQDMDNDPLVFGVS
GEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR
IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSQFFAIDSARGIVTVIRELDYETTQAYQLTVNATDQ
DKTRPLSTLANLAIIITDVQDMDPIFINLPYSTNIYEHSPPGTTVRIITAIDQDKGRPRGIGYTIVSGNT
NSIFALDYISGVLTLNGLLDRENPLYSHGFILTVKGTELNDDRTPSDATVTTTFNILVIDINDNAPEFNS
SEYSVAITELAQVGFALPLFIQVVDKDENLGLNSMFEVYLVGNNSHHFIISPTSVQGKADIRIRVAIPLD
YETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNISLYENVTVGTSVLTVLVSPRFTA
GPLSSPGPTVVRHPEGFCPRDLSNQGRRHPQIPELCLLVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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