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Report for CCDS45042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45042.1 Public Homo sapiens 13 COG6 24 110 108 CCDS HistoryNCBI Gene:57511Re-query CCDS DB by CCDS ID:45042.1Re-query CCDS DB by GeneID:57511See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416691.5 ENSP00000403733.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416691.5Link to Ensembl Protein Viewer:ENSP00000403733.1Re-query CCDS DB by Nucleotide ID:ENST00000416691Re-query CCDS DB by Protein ID:ENSP00000403733
Original member Current member NCBI NM_001145079.2 NP_001138551.1 Accepted alive Link to Nucleotide Sequence:NM_001145079.2Link to Protein Sequence:NP_001138551.1Re-query CCDS DB by Nucleotide ID:NM_001145079Re-query CCDS DB by Protein ID:NP_001138551Link to BLAST:NP_001138551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138551.1 615 Q9Y2V7-2 615 100% 0 0

Chromosomal Locations for CCDS 45042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 39655727 39655879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39659364 39659507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39660810 39660881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39665096 39665154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39677468 39677579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39679538 39679620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39679975 39680045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39682171 39682264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39687503 39687631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39687708 39687799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39689760 39689824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39694634 39694725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39699501 39699618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39719236 39719367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39719660 39719827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39723333 39723440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39724508 39724561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39727469 39727548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 39788335 39788356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCAGAGGGCAGCGGGGAAGTGGTCGCAGTGTCTGCGACCGGGGCTGCCAACGGCCTCAACAATGGGG
CAGGCGGGACCTCGGCGACGACCTGCAACCCGCTGTCGCGCAAGCTGCATAAGATCCTGGAGACGCGGCT
GGACAACGACAAGGAGATGTTAGAAGCTCTCAAGGCACTTTCAACCTTTTTTGTTGAAAATAGTCTGCGG
ACTCGAAGAAATTTACGTGGAGATATTGAACGTAAAAGTTTAGCCATCAATGAAGAATTTGTAAGCATTT
TCAAGGAAGTGAAGGAGGAACTTGAAAGCATAAGCGAAGATGTTCAAGCAATGAGCAACTGTTGTCAAGA
TATGACAAGTCGCCTACAGGCAGCAAAGGAACAGACTCAAGATTTAATAGTAAAAACCACTAAGCTTCAA
TCTGAAAGCCAAAAATTAGAGATAAGAGCTCAAGTTGCAGATGCCTTCTTATCCAAGTTCCAACTGACTT
CTGATGAAATGAGTCTTCTCCGAGGTACAAGAGAAGGACCCATTACTGAGGATTTTTTCAAGGCACTGGG
AAGAGTAAAACAGATTCATAATGATGTCAAAGTTCTCTTGCGTACAAATCAACAAACGGCAGGTTTAGAA
ATTATGGAACAGATGGCCTTACTTCAAGAAACGGCTTATGAAAGACTTTACCGATGGGCTCAAAGTGAAT
GCAGAACATTGACACAAGAATCATGTGACGTATCTCCAGTATTGACACAGGCAATGGAAGCCCTGCAGGA
CAGACCTGTCTTATATAAATATACCTTAGATGAATTTGGAACAGCCAGAAGAAGTACAGTTGTTCGTGGA
TTTATTGATGCGCTCACAAGAGGGGGCCCCGGAGGTACACCTAGACCAATTGAAATGCATTCTCATGACC
CTTTGAGGTATGTAGGAGATATGTTGGCTTGGCTCCATCAAGCTACTGCTTCTGAAAAGGAACACCTTGA
AGCTCTCTTAAAGCATGTAACTACACAAGGTGTTGAAGAAAATATTCAAGAAGTTGTTGGGCATATCACT
GAAGGTGTGTGCAGGCCTCTAAAGGTTCGAATTGAGCAAGTAATAGTTGCTGAACCTGGGGCAGTTTTAT
TATATAAAATTTCTAATCTCCTCAAATTTTATCACCATACAATCAGTGGTATTGTTGGAAATAGTGCAAC
TGCATTATTGACTACCATTGAAGAAATGCATTTGCTAAGCAAAAAAATATTCTTCAATAGCTTGAGTCTT
CATGCAAGTAAATTAATGGACAAGGTTGAACTCCCACCACCTGATCTTGGACCAAGTTCTGCACTAAATC
AGACACTCATGTTGCTGCGTGAAGTTTTAGCATCTCACGATTCTTCAGTTGTACCATTAGATGCTCGTCA
AGCTGATTTTGTGCAGGTTTTATCATGTGTCTTGGATCCTCTCCTACAGATGTGTACTGTATCAGCCAGC
AATTTAGGCACAGCTGACATGGCCACTTTCATGGTCAATTCACTATATATGATGAAGACAACATTAGCTC
TATTTGAATTCACTGACAGACGTCTGGAAATGCTACAGTTTCAGATCGAAGCACATTTGGACACACTTAT
AAATGAGCAAGCCTCTTATGTTTTAACTAGGGTAGGCTTGAGTTACATCTATAACACTGTACAGCAACAT
AAACCTGAACAGGGCTCTTTAGCTAATATGCCCAACCTAGATTCTGTGACACTGAAGGCTGCAATGGTTC
AGTTTGATCGTTATCTGTCAGCCCCAGACAACCTATTGATACCACAGCTGAACTTTCTTCTAAGTGCCAC
AGTGAAGCGTCCACCCAACGGCCCATGA

Translation (615 aa):
MAEGSGEVVAVSATGAANGLNNGAGGTSATTCNPLSRKLHKILETRLDNDKEMLEALKALSTFFVENSLR
TRRNLRGDIERKSLAINEEFVSIFKEVKEELESISEDVQAMSNCCQDMTSRLQAAKEQTQDLIVKTTKLQ
SESQKLEIRAQVADAFLSKFQLTSDEMSLLRGTREGPITEDFFKALGRVKQIHNDVKVLLRTNQQTAGLE
IMEQMALLQETAYERLYRWAQSECRTLTQESCDVSPVLTQAMEALQDRPVLYKYTLDEFGTARRSTVVRG
FIDALTRGGPGGTPRPIEMHSHDPLRYVGDMLAWLHQATASEKEHLEALLKHVTTQGVEENIQEVVGHIT
EGVCRPLKVRIEQVIVAEPGAVLLYKISNLLKFYHHTISGIVGNSATALLTTIEEMHLLSKKIFFNSLSL
HASKLMDKVELPPPDLGPSSALNQTLMLLREVLASHDSSVVPLDARQADFVQVLSCVLDPLLQMCTVSAS
NLGTADMATFMVNSLYMMKTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRVGLSYIYNTVQQH
KPEQGSLANMPNLDSVTLKAAMVQFDRYLSAPDNLLIPQLNFLLSATVKRPPNGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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