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Report for CCDS45417.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45417.2 Public Homo sapiens 16 SHISA9 24 110 108 CCDS HistoryNCBI Gene:729993Re-query CCDS DB by CCDS ID:45417.2Re-query CCDS DB by GeneID:729993See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 45417.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available protein and publication data. The previously represented N-terminus was over-extended, which eliminated an N-terminal signal peptide that is present in the update.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 45417.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000558583.3 ENSP00000454014.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000558583.3Link to Ensembl Protein Viewer:ENSP00000454014.2Re-query CCDS DB by Nucleotide ID:ENST00000558583Re-query CCDS DB by Protein ID:ENSP00000454014
Original member Current member NCBI NM_001145204.3 NP_001138676.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145204.3Link to Protein Sequence:NP_001138676.2Re-query CCDS DB by Nucleotide ID:NM_001145204Re-query CCDS DB by Protein ID:NP_001138676Link to BLAST:NP_001138676.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138676.2 424 B4DS77-1 424 100% 0 0

Chromosomal Locations for CCDS 45417.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 12902065 12902627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 12916688 12916815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13203394 13203549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13213253 13213300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13235030 13235409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCGCCGCGTCCTTCGGCTGCTCCTCGGTTGCTTCCTCACCGAGCTGTGCGCCCGCGTGTGCCGGGCGC
AGGAGCGAGCGGGACACGGGCAGCTGGCGCAACTGGGCGGCGTGTTGCTGCTGGCGGGGGGCAACCGCTC
CGGGGCCGCCTCCGGAGAGGCCAGCGAGGGCGCTGAGGCATCGGACGCGCCCCCGACCCGGGCGCCCACG
CCGGACTTCTGCCGGGGCTACTTCGATGTCATGGGCCAGTGGGACCCGCCGTTCAACTGCAGCTCGGGCG
ACTTCATCTTCTGCTGCGGGACTTGTGGCTTCCGGTTCTGCTGCACGTTTAAGAAGCGGCGACTGAACCA
AAGCACCTGCACCAACTACGACACGCCGCTCTGGCTCAACACCGGCAAGCCCCCCGCCCGCAAGGACGAC
CCCTTGCACGACCCCACCAAGGACAAGACCAACCTGATCGTCTACATCATCTGCGGGGTGGTGGCCGTCA
TGGTGCTCGTGGGCATCTTCACCAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAAAGGGAGCACATGTC
CAGGGCCCTTGCGGATGTCATGAGACCACAGGGCCACTGCAACACTGATCACATGGAGAGAGACCTAAAC
ATCGTTGTCCACGTCCAGCATTATGAGAACATGGACACGAGAACCCCCATAAATAATCTTCATGCCACCC
AGATGAACAACGCAGTGCCCACCTCTCCTCTGCTCCAGCAGATGGGCCATCCACATTCGTACCCGAACCT
GGGCCAGATCTCCAACCCCTATGAACAGCAGCCACCAGGAAAAGAGCTCAACAAGTACGCCTCCTTAAAG
GCAGTCGGAAGTTCTGATGGTGACTGGGCAGTATCGACACTTAAGTCACCAAAAGCTGACAAGGTCAATG
ACGACTTCTACACCAAGCGACGGCACCTGGCTGAGCTGGCTGCCAAGGGGAACTTACCTCTGCACCCCGT
AAGAGTGGAGGACGAGCCCCGGGCCTTCAGCCCTGAGCACGGTCCTGCCAAGCAGAATGGACAGAAGTCC
CGCACCAACAAGATGCCCCCACATCCCCTGGCCTACACCTCTACCACCAACTTTAAGGGCTGGGACCCCA
ACGAGCAGTCCCTCCGGCGGCAGGCTTACAGCAACAAGGGCAAGCTTGGCACGGCCGAGACAGGCTCCAG
CGACCCCTTGGGAACTCGCCCCCAGCACTACCCACCCCCACAGCCATACTTCATCACCAACAGCAAAACA
GAAGTGACTGTCTGA

Translation (424 aa):
MRRVLRLLLGCFLTELCARVCRAQERAGHGQLAQLGGVLLLAGGNRSGAASGEASEGAEASDAPPTRAPT
PDFCRGYFDVMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDD
PLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGHCNTDHMERDLN
IVVHVQHYENMDTRTPINNLHATQMNNAVPTSPLLQQMGHPHSYPNLGQISNPYEQQPPGKELNKYASLK
AVGSSDGDWAVSTLKSPKADKVNDDFYTKRRHLAELAAKGNLPLHPVRVEDEPRAFSPEHGPAKQNGQKS
RTNKMPPHPLAYTSTTNFKGWDPNEQSLRRQAYSNKGKLGTAETGSSDPLGTRPQHYPPPQPYFITNSKT
EVTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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