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Report for CCDS45550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45550.1 Public Homo sapiens 16 ZNF778 24 110 108 CCDS HistoryNCBI Gene:197320Re-query CCDS DB by CCDS ID:45550.1Re-query CCDS DB by GeneID:197320See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620195.4 ENSP00000481538.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620195.4Link to Ensembl Protein Viewer:ENSP00000481538.1Re-query CCDS DB by Nucleotide ID:ENST00000620195Re-query CCDS DB by Protein ID:ENSP00000481538
Original member Current member NCBI NM_182531.5 NP_872337.2 Accepted alive Link to Nucleotide Sequence:NM_182531.5Link to Protein Sequence:NP_872337.2Re-query CCDS DB by Nucleotide ID:NM_182531Re-query CCDS DB by Protein ID:NP_872337Link to BLAST:NP_872337.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872337.2 729 Q96MU6-1 729 100% 0 0

Chromosomal Locations for CCDS 45550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89221128 89221152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89222092 89222183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89223157 89223283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89225555 89225631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89226694 89228562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGGCAGCCCCTGACCTGGCCCACGGAGGTCATGTTTCTAGGGACTCAGTCTGCCTTCATGAAGAACAGA
CACAGGCAGCAGGGATGGTGGCTGGCTGGCTGATAAATTGTTACCAGGACGCGGTGACCTTTGACGACGT
GGCTGTGGACTTCACCCAGGAGGAATGGACTTTACTGGACCCATCTCAGAGAGACCTCTACAGAGATGTG
ATGCTGGAAAACTACGAGAACCTGGCCTCAGTAGAATGGCGACTTAAAACCAAAGGGCCAGCACTTCGGC
AGGATAGATCTTGGTTCAGAGCATCAAATGAGACACAGACGGCAAGAAGCCACAATGGAGGGCAGCTCTG
TGACCGCACGCAGTGTGGAGAAGCTTTCAGTGAACACTCAGGCCTCAGCACACACGTGAGAACTCAAAAT
ACAGGAGACAGTTGTGTGTCTAATCATTATGAAAGGGACTTTTTTATTCCATGCCAGAAAACCTTGTTCA
AAATTGGAGAGCAGTTTTCCGTGTTGGGTCAGTGTGGAAAAGCCTTCAGCTCTACTCCAAATGTTGTTTC
CCAGCAAGCATGCACTCGGGACAGATCTCTTGACTACAGCAGCTGTGGGGAAGTGTTCCTTAATCAGTCA
TACCTTCAGGCACGTGCGGGAAGTCACAACGGAGAAGAAACATGGAAATGGAAGCCGTGTGGGAAAGCTC
TAACTCACTCCATGGGCTGCGCCACACCTGTTGAAATGCATGCCGTCAGGAATCCCCACGTATGTAGGGA
ATGTGGGAAGGCCTTTAGGTACACTGCCTACCTTACTGGTCGCGTGCAAGTCCACCCTGGGGAAAAGCCC
TGTGAATTGGAAGAATGTGGAAAAGCCTCCCCTGTTTCTTCCAGCCTAACTCAACATGTAAGAATTCATG
CTGCAGAGAAACCCTGTGAATGTAAAGAATGCGGAAAAGCCTTCACTGGACTCTCAGGTCTTTCTAAACA
CGTCCAAACAGACCCTGGACAGAAGCCCTATGAATGTAAGGACTGTGGGAAAGCCTGCGGTGGGTTTTAT
CTACTGAATGAGCATGGAAAAACTCACACGAGGGAGAAGCCCTTTGCATGTGTGGTTTGCGGAAAATATT
TTAGAAATTCCTCATGCCTTAATAATCATGTTCGAATTCACACTGGAATAAAACCCTATACATGCAGCTA
CTGTGGGAAGGCCTTCACTGTGCGCTGTGGCCTTACTAGACACGTACGAACACACACGGGCGAGAAGCCA
TACACGTGTAAGGACTGCGGGAAAGCCTTCTGTACATCCTCGGGCCTTACTGAGCATGTAAGGACTCACA
CTGGAGAGAAACCATATGAATGTAAAGATTGTGGGAAATCCTTCACTGTTTCTTCAAGCCTGACTGAGCA
CGCGAGAATCCATACCGGAGAGAAACCCTACGAATGTAAGCAGTGTGGCAAAGCCTTCACAGGGCGCTCA
GGCCTCACTAAACACATGCGGACACACACCGGGGAGAAGCCCTATGAATGTAAGGACTGTGGGAAAGCCT
ACAATAGGGTTTATCTACTGAATGAGCATGTGAAAACTCACACAGAGGAGAAGCCCTTTATATGTACGGT
ATGCAGGAAATCCTTCAGAAATTCCTCGTGCCTGAATAAGCACATTCAGATTCACACTGGAATAAAACCT
TATGAATGTAAGGACTGTGGGAAAACATTCACTGTTTCTTCGAGCCTAACCGAGCACATACGAACTCACA
CTGGAGAGAAACCTTATGAATGTAAAGTATGCGGAAAGGCCTTCACCACATCCTCACACCTTATCGTGCA
CATAAGAACCCACACCGGTGAGAAACCCTACATATGTAAGGAGTGTGGGAAAGCCTTTGCTTCCTCCTCA
CACCTTATCGAACACAGAAGGACTCACACAGGAGAGAAACCTTACATATGTAACGAGTGTGGGAAAGCCT
TCCGTGCCTCCTCTCACCTGCATAAACATGGAAGAATTCACACTGGGCAGAAACCCTATAAATGTAAGGA
ATGTGGGAAAGCATACAATAGGTTTTATCTACTAAAAGAACATTTAAAAACTTACACTGAAGAGCAGGTT
TTTGTATGTAAGGACTGTGGAAAATCTTTTAAGAATTCCTCATGCCTTAACCATCACACTCAAATTCACA
CTGATGAGAAACCTTTCTAA

Translation (729 aa):
MAAPDLAHGGHVSRDSVCLHEEQTQAAGMVAGWLINCYQDAVTFDDVAVDFTQEEWTLLDPSQRDLYRDV
MLENYENLASVEWRLKTKGPALRQDRSWFRASNETQTARSHNGGQLCDRTQCGEAFSEHSGLSTHVRTQN
TGDSCVSNHYERDFFIPCQKTLFKIGEQFSVLGQCGKAFSSTPNVVSQQACTRDRSLDYSSCGEVFLNQS
YLQARAGSHNGEETWKWKPCGKALTHSMGCATPVEMHAVRNPHVCRECGKAFRYTAYLTGRVQVHPGEKP
CELEECGKASPVSSSLTQHVRIHAAEKPCECKECGKAFTGLSGLSKHVQTDPGQKPYECKDCGKACGGFY
LLNEHGKTHTREKPFACVVCGKYFRNSSCLNNHVRIHTGIKPYTCSYCGKAFTVRCGLTRHVRTHTGEKP
YTCKDCGKAFCTSSGLTEHVRTHTGEKPYECKDCGKSFTVSSSLTEHARIHTGEKPYECKQCGKAFTGRS
GLTKHMRTHTGEKPYECKDCGKAYNRVYLLNEHVKTHTEEKPFICTVCRKSFRNSSCLNKHIQIHTGIKP
YECKDCGKTFTVSSSLTEHIRTHTGEKPYECKVCGKAFTTSSHLIVHIRTHTGEKPYICKECGKAFASSS
HLIEHRRTHTGEKPYICNECGKAFRASSHLHKHGRIHTGQKPYKCKECGKAYNRFYLLKEHLKTYTEEQV
FVCKDCGKSFKNSSCLNHHTQIHTDEKPF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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