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Report for CCDS45615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45615.1 Public Homo sapiens 17 SHISA6 24 110 108 CCDS HistoryNCBI Gene:388336Re-query CCDS DB by CCDS ID:45615.1Re-query CCDS DB by GeneID:388336See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45615.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441885.8 ENSP00000390084.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000441885.8Link to Ensembl Protein Viewer:ENSP00000390084.3Re-query CCDS DB by Nucleotide ID:ENST00000441885Re-query CCDS DB by Protein ID:ENSP00000390084
Original member Current member NCBI NM_207386.4 NP_997269.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207386.4Link to Protein Sequence:NP_997269.2Re-query CCDS DB by Nucleotide ID:NM_207386Re-query CCDS DB by Protein ID:NP_997269Link to BLAST:NP_997269.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997269.2 551 Q6ZSJ9-3 551 100% 0 0

Chromosomal Locations for CCDS 45615.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 11241423 11242060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 11263366 11263526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 11379414 11379509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 11551896 11551952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 11555740 11555892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 11557754 11558304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGCGCTGCGGCGCCTCCTGCTGCTGCTGCTGCTCTCGCTGGAGTCCCTGGACCTGCTGCCCAGCGTCC
ACGGAGCCCGCGGCCGCGCCGCCAACCGGACCCTGAGTGCAGGCGGCGCTGCCGTCGGGGGCCGGAGGGC
CGGGGGCGCCCTGGCACGGGGCGGCCGCGAGCTGAACGGCACCGCCCGGGCGCCCGGAATCCCGGAGGCG
GGAAGCCGGCGGGGGCAGCCCGCGGCGGCTGTGGCGGCGGCGGCCAGCGCGGCCGTCACCTACGAGACGT
GCTGGGGCTACTACGACGTGAGCGGCCAGTACGACAAGGAGTTCGAGTGTAACAACAGCGAGAGCGGCTA
CCTGTACTGCTGCGGTACCTGCTACTACCGCTTCTGCTGCAAGAAGCGCCACGAGAAGCTGGACCAGCGC
CAGTGCACCAACTACCAGAGCCCGGTGTGGGTACAGACGCCCAGCACCAAGGTGGTGTCGCCGGGGCCCG
AGAACAAGTACGACCCGGAGAAGGACAAGACCAACTTCACCGTCTACATCACCTGCGGGGTGATCGCCTT
CGTCATCGTGGCCGGCGTCTTCGCCAAGGTCTCCTACGACAAGGCCCACCGCCCTCCACGGGAGATGAAC
ATCCACAGGGCTCTGGCTGACATCTTAAGACAACAGGGACCAATCCCCATAGCACACTGTGAAAGAGAAA
CTATCTCGGCTATCGATACCTCTCCCAAAGAGAACACGCCGGTCAGATCGTCCTCCAAAAACCACTACAC
TCCTGTGCGTACGGCCAAGCAGACTCCAGGGCATTATGGGAAGGATGCTTACCGAAGTGGAGGACCTGAT
CTCCATAACTTCATCTCATCTGGATTTGTCACATTAGGAAGAGGACACACCAAGGGTGATCATCAATATA
ACCATCCGATTTTGAGCAGTGTTACCCAGATCCCGCCACATGAGAAGCCACGGATGAACAACATCCTGAC
ATCAGCCACCGAGCCCTATGACCTCTCCTTCTCCCGCTCGTTCCAGAACTTGGCCCACCTGCCCCCATCC
TACGAGTCTGCAGTAAAGACCAACCCCAGCAAGTATTCATCTCTGAAGAGGCTAACCGACAAGGAGGCTG
ACGAGTATTACATGAGACGGCGGCACCTGCCCGACCTGGCTGCCCGCGGCACCCTCCCCCTCAATGTCAT
CCAGATGTCCCAACAGAAGCCGTTGCCAAGGGAACGACCCCGCCGGCCCATCCGGGCCATGTCCCAGGAC
AGGGTCCTGTCCCCGGATCGGGGCCTGCCAGATGAGTTCAGCATGCCCTACGACCGCATCCTGTCCGACG
AGCAGCTGCTCTCCACGGAGCGCCTGCACTCCCAGGACCCGCTGCTGTCCCCGGAGCGGACGGCCTTTCC
CGAGCAGTCGCTGTCCAGGGCCATCTCGCACACGGACGTCTTTGTGTCCACACCCGTGCTGGACCGCTAC
CGCATGAGCAAGATGCACTCTCATCCCAGTGCCTCCAATAACTCATACGCCACCCTGGGCCAGAGCCAGA
CGGCAGCCAAGCGTCATGCCTTTGCCTCACGCAGACACAACACGGTGGAGCAGCTGCACTACATCCCGGG
CCACCACACCTGCTACACAGCCAGCAAGACCGAAGTGACCGTGTGA

Translation (551 aa):
MALRRLLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARAPGIPEA
GSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYCCGTCYYRFCCKKRHEKLDQR
QCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVAGVFAKVSYDKAHRPPREMN
IHRALADILRQQGPIPIAHCERETISAIDTSPKENTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPD
LHNFISSGFVTLGRGHTKGDHQYNHPILSSVTQIPPHEKPRMNNILTSATEPYDLSFSRSFQNLAHLPPS
YESAVKTNPSKYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQD
RVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRY
RMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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