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Report for CCDS45747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45747.1 Public Homo sapiens 17 SKA2 24 110 108 CCDS HistoryNCBI Gene:348235Re-query CCDS DB by CCDS ID:45747.1Re-query CCDS DB by GeneID:348235See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45747.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330137.12 ENSP00000333433.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330137.12Link to Ensembl Protein Viewer:ENSP00000333433.7Re-query CCDS DB by Nucleotide ID:ENST00000330137Re-query CCDS DB by Protein ID:ENSP00000333433
Original member Current member NCBI NM_182620.4 NP_872426.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182620.4Link to Protein Sequence:NP_872426.1Re-query CCDS DB by Nucleotide ID:NM_182620Re-query CCDS DB by Protein ID:NP_872426Link to BLAST:NP_872426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872426.1 121 Q8WVK7-1 121 100% 0 0

Chromosomal Locations for CCDS 45747.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59112277 59112345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59119319 59119495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59131281 59131367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59155131 59155163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGAGGCGGAGGTCGATAAGCTGGAACTGATGTTCCAGAAAGCTGAGTCTGATCTGGATTACATTCAAT
ACAGGCTGGAATATGAAATCAAGACTAATCATCCTGATTCAGCAAGTGAGAAAAATCCAGTTACACTCTT
AAAGGAATTGTCAGTGATAAAGTCTCGATATCAAACTTTGTATGCCCGCTTTAAACCAGTTGCTGTTGAG
CAGAAAGAGAGTAAGAGCCGCATTTGTGCTACTGTGAAAAAGACTATGAATATGATACAAAAACTACAGA
AGCAAACAGACCTGGAGCTGTCACCACTGACTAAAGAAGAGAAAACTGCGGCAGAGCAATTCAAATTTCA
CATGCCAGATTTATGA

Translation (121 aa):
MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVE
QKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHMPDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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