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Report for CCDS45759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45759.1 Public Homo sapiens 17 CSHL1 24 110 108 CCDS HistoryNCBI Gene:1444Re-query CCDS DB by CCDS ID:45759.1Re-query CCDS DB by GeneID:1444See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45759.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438387.6 ENSP00000402632.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438387.6Link to Ensembl Protein Viewer:ENSP00000402632.2Re-query CCDS DB by Nucleotide ID:ENST00000438387Re-query CCDS DB by Protein ID:ENSP00000402632
Original member Current member NCBI NM_022580.3 NP_072102.1 Accepted alive Link to Nucleotide Sequence:NM_022580.3Link to Protein Sequence:NP_072102.1Re-query CCDS DB by Nucleotide ID:NM_022580Re-query CCDS DB by Protein ID:NP_072102Link to BLAST:NP_072102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_072102.1 139 Q14406-3 139 100% 0 0

Chromosomal Locations for CCDS 45759.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63909711 63909908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63910162 63910326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63910420 63910466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63911187 63911196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGCTGCAGACTCTATTCCGACATCCTCCAACATGGAGGAAACGCAGCAGAAATCCAACTTAGAGCTGC
TCCACATCTCCCTGCTGCTCATCGAGTCGCGGCTGGAGCCCGTGCGGTTCCTCAGGAGTACCTTCACCAA
CAACCTGGTGTATGACACCTCGGACAGCGATGACTATCACCTCCTAAAGGACCTAGAGGAAGGCATCCAA
ATGCTGATGGGGAGGCTGGAAGACGGCAGCCACCTGACTGGGCAGACCCTCAAGCAGACCTACAGCAAGT
TTGACACAAACTCGCACAACCATGACGCACTGCTCAAGAACTACGGGCTGCTCCACTGCTTCAGGAAGGA
CATGGACAAGGTCGAGACATTCCTGCGCATGGTGCAGTGCCGCTCTGTGGAGGGCAGCTGTGGCTTCTAG

Translation (139 aa):
MAADSIPTSSNMEETQQKSNLELLHISLLLIESRLEPVRFLRSTFTNNLVYDTSDSDDYHLLKDLEEGIQ
MLMGRLEDGSHLTGQTLKQTYSKFDTNSHNHDALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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