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Report for CCDS45777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45777.1 Public Homo sapiens 17 RECQL5 24 110 108 CCDS HistoryNCBI Gene:9400Re-query CCDS DB by CCDS ID:45777.1Re-query CCDS DB by GeneID:9400See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45777.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420326.6 ENSP00000414933.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420326.6Link to Ensembl Protein Viewer:ENSP00000414933.2Re-query CCDS DB by Nucleotide ID:ENST00000420326Re-query CCDS DB by Protein ID:ENSP00000414933
Original member Current member NCBI NM_001003716.4 NP_001003716.1 Accepted alive Link to Nucleotide Sequence:NM_001003716.4Link to Protein Sequence:NP_001003716.1Re-query CCDS DB by Nucleotide ID:NM_001003716Re-query CCDS DB by Protein ID:NP_001003716Link to BLAST:NP_001003716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003716.1 410 O94762-2 410 100% 0 0

Chromosomal Locations for CCDS 45777.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75651182 75651265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75658298 75658460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75660955 75661066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75661606 75661708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75662479 75662997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75665051 75665172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75666428 75666557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGAGCAGCCACCATACCACCTTTCCTTTTGACCCTGAGCGGCGAGTCCGGAGTACGCTGAAGAAGGTCT
TTGGGTTTGACTCTTTTAAGACGCCTTTACAGGAGAGTGCGACCATGGCTGTAGTAAAAGGTAACAAGGA
CGTCTTTGTGTGCATGCCCACAGGGGCAGGAAAATCCCTATGCTATCAGCTCCCTGCTCTGTTGGCCAAA
GGCATCACCATTGTAGTCTCTCCTCTCATTGCTTTGATTCAGGACCAAGTGGACCACTTGCTAACCCTAA
AGGTACGAGTAAGTTCCCTGAACTCGAAGCTCTCTGCACAGGAAAGGAAGGAGCTGCTTGCTGACCTGGA
GCGAGAAAAGCCCCAGACCAAGATTCTGTACATCACCCCAGAGATGGCAGCTTCATCCTCCTTCCAGCCC
ACCCTGAACTCCCTGGTGTCCCGCCACCTGCTGTCTTACTTGGTGGTGGATGAAGCTCATTGTGTTTCCC
AATGGGGGCATGACTTTCGTCCTGACTACTTGCGTCTGGGTGCCCTGCGCTCCCGCCTGGGACATGCCCC
TTGTGTGGCTCTGACCGCCACAGCCACCCCACAGGTCCAAGAGGACGTGTTTGCTGCCCTGCACCTGAAG
AAACCAGTTGCCATCTTCAAGACTCCCTGCTTCCGGGCCAACCTCTTCTATGATGTGCAATTCAAGGAAC
TGATTTCTGATCCCTATGGGAACCTGAAGGACTTCTGCCTTAAGGCTCTTGGACAGGAGGCTGATAAAGG
GTTATCTGGCTGCGGCATTGTGTACTGCAGGACTAGAGAGGCTTGTGAACAGCTGGCCATAGAGCTCAGC
TGCAGGGGTGTGAACGCCAAGGCTTACCATGCAGGGCTGAAGGCCTCTGAAAGAACGCTGGTGCAGAACG
ACTGGATGGAGGAGAAGGTCCCTGTAATTGTTGCAACCATTAGTTTTGGGATGGGAGTGGATAAAGCCAA
TGTCAGGTTTGTCGCCCATTGGAATATTGCCAAGTCTATGGCTGGGTACTACCAGGAGTCTGGCCGGGCT
GGCAGGGATGGGAAGCCTTCCTGGTGCCGTCTCTATTACTCCAGGAATGACCGGGACCAAGTCAGCTTCC
TGATCAGGAAGGAAGTAGCAAAACTCCAGGAAAAGAGAGGAAACAAAGCATCTGATAAAGCCACTATCAT
GGCCTTTGATGCCCTGGTGACCTTCTGTGAAGAACTGGGGTAA

Translation (410 aa):
MSSHHTTFPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAK
GITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQP
TLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLK
KPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGIVYCRTREACEQLAIELS
CRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRA
GRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEELG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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