NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46011.1 Public Homo sapiens 19 USE1 24 110 108 CCDS HistoryNCBI Gene:55850Re-query CCDS DB by CCDS ID:46011.1Re-query CCDS DB by GeneID:55850See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46011.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263897.10 ENSP00000263897.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263897.10Link to Ensembl Protein Viewer:ENSP00000263897.4Re-query CCDS DB by Nucleotide ID:ENST00000263897Re-query CCDS DB by Protein ID:ENSP00000263897
Original member Current member NCBI NM_018467.4 NP_060937.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018467.4Link to Protein Sequence:NP_060937.2Re-query CCDS DB by Nucleotide ID:NM_018467Re-query CCDS DB by Protein ID:NP_060937Link to BLAST:NP_060937.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060937.2 259 Q9NZ43-1 259 100% 0 0

Chromosomal Locations for CCDS 46011.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17215406 17215507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17215802 17215851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17215992 17216070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17216169 17216321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17217453 17217462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17218364 17218391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17219213 17219387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17219631 17219813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGCGGCGTCGAGGCTGGAGCTAAACCTGGTGCGGCTGCTATCCCGCTGCGAGGCGATGGCAGCGGAGA
AACGGGACCCGGACGAGTGGCGCCTGGAGAAGTACGTGGGAGCCCTAGAGGACATGTTGCAGGCCCTGAA
GGTCCACGCGAGCAAACCGGCCTCTGAGGTGATCAATGAATATTCCTGGAAGGTGGATTTTCTGAAGGGG
ATGCTGCAAGCCGAGAAGCTGACCTCCTCCTCAGAGAAAGCACTGGCCAACCAGTTCCTGGCCCCTGGCC
GTGTGCCAACCACAGCCAGAGAGCGAGTGCCCGCCACAAAGACGGTGCATCTGCAGTCACGGGCGCGGTA
CACCAGCGAGATGCGGAGTGAGCTACTAGGCACGGACTCTGCAGAGCCTGAGATGGACGTAAGGAAGAGA
ACTGGAGTGGCAGGGTCCCAGCCAGTGAGTGAGAAGCAGTTGGCAGCTGAGCTAGACCTCGTCCTGCAGC
GACATCAGAACCTCCAGGAAAAGCTGGCGGAAGAGATGCTAGGACTGGCCCGGAGCCTCAAGACCAATAC
CCTGGCCGCCCAGAGTGTCATCAAGAAGGACAACCAGACCCTGTCACACTCACTGAAAATGGCGGACCAG
AACCTGGAGAAACTGAAGACGGAGTCAGAGCGTCTGGAGCAGCACACGCAGAAGTCAGTCAACTGGCTGC
TCTGGGCCATGCTCATTATCGTCTGCTTCATCTTCATTAGCATGATCCTCTTCATTCGAATCATGCCTAA
ACTCAAATAA

Translation (259 aa):
MAASRLELNLVRLLSRCEAMAAEKRDPDEWRLEKYVGALEDMLQALKVHASKPASEVINEYSWKVDFLKG
MLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSEMRSELLGTDSAEPEMDVRKR
TGVAGSQPVSEKQLAAELDLVLQRHQNLQEKLAEEMLGLARSLKTNTLAAQSVIKKDNQTLSHSLKMADQ
NLEKLKTESERLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPKLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH