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Report for CCDS46038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46038.1 Public Homo sapiens 19 TDRD12 24 110 108 CCDS HistoryNCBI Gene:91646Re-query CCDS DB by CCDS ID:46038.1Re-query CCDS DB by GeneID:91646See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421545.2 ENSP00000390621.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421545.2Link to Ensembl Protein Viewer:ENSP00000390621.2Re-query CCDS DB by Nucleotide ID:ENST00000421545Re-query CCDS DB by Protein ID:ENSP00000390621
Original member Current member NCBI NM_001110822.2 NP_001104292.1 Accepted alive Link to Nucleotide Sequence:NM_001110822.2Link to Protein Sequence:NP_001104292.1Re-query CCDS DB by Nucleotide ID:NM_001110822Re-query CCDS DB by Protein ID:NP_001104292Link to BLAST:NP_001104292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104292.1 395 Q587J7-2 395 100% 0 0

Chromosomal Locations for CCDS 46038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 32720073 32720096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32731725 32731883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32738856 32738992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32742781 32742900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32748476 32748531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32749784 32749869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32755992 32756181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32757038 32757130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32772753 32772850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32773456 32773532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32777149 32777229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32790531 32790591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 32790674 32790679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCTCCAGCTCCTGGTGCTGAAGATTGAAGATCCAGGTTGCTTCTGGGTTATTATAAAAGGGTGTAGTC
CCTTTTTAGATCATGATGTCGATTATCAAAAATTAAATAGTGCCATGAATGACTTCTACAACAGCACGTG
TCAAGATATAGAAATAAAACCCTTAACATTGGAAGAAGGACAGGTGTGTGTGGTCTATTGTGAGGAGCTA
AAGTGCTGGTGCAGGGCCATTGTCAAATCAATTACGTCTTCCGCAGACCAGTACCTGGCAGAATGTTTCC
TTGTGGACTTTGCCAAGAACATTCCAGTCAAATCTAAAAACATCCGAGTTGTAGTAGAATCGTTTATGCA
GCTTCCCTATAGAGCAAAAAAATTCAGCCTGTACTGCACAAAGCCTGTCACATTACACATTGACTTCTGC
CGAGACAGTACTGACATTGTACCTGCCAAGAAGTGGGACAATGCAGCTATTCAGTACTTTCAGAACCTTC
TGAAAGCAACTACCCAGGTGGAAGCCAGATTATGTGCTGTGGAAGAAGATACATTTGAGGTTTACCTTTA
TGTAACTATAAAAGATGAAAAAGTTTGTGTTAATGATGATCTTGTTGCAAAGAACTATGCTTGTTATATG
TCACCTACAAAGAATAAAAACCTTGATTATTTAGAAAAACCAAGATTGAATATAAAATCAGCACCCTCCT
TCAATAAACTCAATCCAGCACTTACACTCTGGCCAATGTTTTTGCAAGGAAAAGATGTTCAAGGAATGGA
AGATTCACATGGTGTAAATTTTCCGGCACAATCTCTGCAACATACATGGTGCAAGGGTATTGTCGGTGAC
CTCAGGCCAACAGCCACAGCACAGGACAAAGCTGTAAAATGTAATATGGATTCATTGAGAGATTCACCTA
AAGACAAATCTGAAAAGAAACACCATTGCATCTCTTTAAAAGATACAAATAAGCGTGTTGAATCCTCAGT
GTACTGGCCAGCAAAAAGAGGCATAACCATATATGCTGATCCAGATGTACCAGAAGCAAGTGCTTTAAGT
CAGAAGTCAAATGAGAAACCTCTTAGATTGACTGAGAAGAAAGAATATGATGAGAAGAATAGCTGTGTGA
AATTACTGCAGTTTTTAAATCCTGATCCTTTGAGAGCTGACGGAATCTCTGATCTCCAGCAGACTTGA

Translation (395 aa):
MLQLLVLKIEDPGCFWVIIKGCSPFLDHDVDYQKLNSAMNDFYNSTCQDIEIKPLTLEEGQVCVVYCEEL
KCWCRAIVKSITSSADQYLAECFLVDFAKNIPVKSKNIRVVVESFMQLPYRAKKFSLYCTKPVTLHIDFC
RDSTDIVPAKKWDNAAIQYFQNLLKATTQVEARLCAVEEDTFEVYLYVTIKDEKVCVNDDLVAKNYACYM
SPTKNKNLDYLEKPRLNIKSAPSFNKLNPALTLWPMFLQGKDVQGMEDSHGVNFPAQSLQHTWCKGIVGD
LRPTATAQDKAVKCNMDSLRDSPKDKSEKKHHCISLKDTNKRVESSVYWPAKRGITIYADPDVPEASALS
QKSNEKPLRLTEKKEYDEKNSCVKLLQFLNPDPLRADGISDLQQT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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