NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46165.1 Public Homo sapiens 19 ZNF534 24 110 108 CCDS HistoryNCBI Gene:147658Re-query CCDS DB by CCDS ID:46165.1Re-query CCDS DB by GeneID:147658See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46165.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332323.10 ENSP00000327538.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332323.10Link to Ensembl Protein Viewer:ENSP00000327538.6Re-query CCDS DB by Nucleotide ID:ENST00000332323Re-query CCDS DB by Protein ID:ENSP00000327538
Original member Current member NCBI NM_001143939.3 NP_001137411.1 Accepted alive Link to Nucleotide Sequence:NM_001143939.3Link to Protein Sequence:NP_001137411.1Re-query CCDS DB by Nucleotide ID:NM_001143939Re-query CCDS DB by Protein ID:NP_001137411Link to BLAST:NP_001137411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137411.1 674 Q76KX8-1 674 100% 0 0

Chromosomal Locations for CCDS 46165.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52431475 52431489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52433955 52434120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52435081 52435209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52437732 52439446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2025 nt):
ATGGCCCTTACTCAGGGGCAATTGTCATTCAGCGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAAT
GCCTGGACCCTGGGCAGAAAGCTTTATACAGGGACGTGATGTTAGAGAACTACAGGAACCTGGTCTCCCT
AGGTGAGGATAATGTCCGTCCAGAAGCCTGCATCTGCTCTGGAATCTGTCTTCCTGACCTGAGTGTTACC
TCCATGTTGGAGCAAAAGAGAGATCCCTGGACTCTGCAGAGTGAAGTGAAAATAATAAACAATCCAGATG
GCAGGGAGTGCATCAAAGGTGTGAACACAGAGAAGAGTTCTAAATTGGGAAGCAGTGCAGGAAACAAGTC
ACTTAAAAATCAACATGGATTAACTCTTCAGTTACATCTGACTGAATGGCAGCCATTTCAAGCTGTAAGG
AATATTTATGGATGTAAGCATGTTGAGAAATCTATCAGTGACAATTCTTCAGTTTCACCAGTTCAAATAA
GTTTTTTCAGTGTCAAAACCCATATTTTTAATAACTACAGAAATGATTTTCTTTTTTCTACATTACTCCC
ACAAGAACAGAAAGTACACATTAGGGAAAAGCCTTATGGATGTAATGAGCATGGGAAAGTCTTCAGAGTG
TCTTCAAGCCTTACTAACCGTCAAGTAATCCACATTGCAGATAAAACTTACAAATGTAGTGACTGTGGCG
AGATCTTTAGTAGCAATTCAAACTTTGCACAACATCAACGAATCCATACTGGAGAGAAGCCTTACAAATA
TAATGAATGTGGCAAAGTCTTCAATCAGAATTCACACCTTGCACAACATCAGAAAATTCATACTGGACAG
AAACCTTACAATAACAAAGAATGTGGGAAAGTCTTTAGTCACCATGCCTACCTTGCACAGCATAGGAAAA
TTCATACTGGAGAGAAGCCTTACAAATGTAGTGAATGTGGCAAAGCATTTAGTGTGTGTTCCAGTCTTAC
TGCTCATCTTGTAATCCATACTGGAGAGAAACCTTATGATTGTAAGGAATGTGGCAAGGTCTTCAGGCAT
AAGTCTTCCCTAACCACTCATCAGACAGTTCATACTGGAGAGAGACCATACAAATGTAATGAATGTGGCA
AGGGGTTTAGTCGAATTGCATTCCTTGCAAGGCATCGGAAAGTTCATACTGGAGAGAAACCTTACAAATG
TAATGAGTGTGGCAAGGTCTTTATTGGCAATTCACGCCTTGCACGACATAGGAAAATTCATACTGGGGGG
AGGCGTTACAAATGTAATGAATGTGGCAAAGCATTTAGAACGTGTTCAGATCTCACTGCCCATCTTCTAA
TCCATACTGGAGAGAAACCTTACGAATGTATAGACTGTGGCAAGGTCTTCAGGCACAAGTCTTCCCTAAC
CTATCACTGTAGAATTCATACTGGAGAGAAGCCTTACAAATGTAACGAATGTGGCAAGGTCTTCAGTCAG
AATTCAAACCTTCAACGACATAGGAAAATTCATACTGGAGAGAAGCTTTACAAATGTAATGAATGTGGCA
AGGTCTTCCGTCAGAATTCACACCTTGCACAACATAGGGATATTCATACTGGAGAGAAGCCTTACAGTTG
TAATGAATGTGGCAAGGTCTTCCGTCGGAATTCACACCTTGTGCGACATAGGAATGTTCATACTGGAGAA
AAGCCTTACAGTTGTAATGAATGTGGCAAGGTCTTCAGTCGGAATTCACACCTTGCGCGACATAGGAATA
TTCATACTGGAGAGAAGCCTCACAGTTGTAATGAATGTGGCAAGGTCTTCAGTCGGAATTCACACCTTGC
GCGACATAGGAAAATTCATACTGGAGAGAAGCTTTACAAATGTAATGAATGTAGCAAGGTCTTCAGTCGG
AATTCACGCCTTGCACAACATAGGAATATTCATACTGGAGTGAAGCCTTACAGTTGTAATGAATGTGGCA
AGGTCTTTAGTAAAAATTCCATCCTAGTACAACATTGCAGTATTCATACCAGAGAGAAGCCTTAA

Translation (674 aa):
MALTQGQLSFSDVAIEFSQEEWKCLDPGQKALYRDVMLENYRNLVSLGEDNVRPEACICSGICLPDLSVT
SMLEQKRDPWTLQSEVKIINNPDGRECIKGVNTEKSSKLGSSAGNKSLKNQHGLTLQLHLTEWQPFQAVR
NIYGCKHVEKSISDNSSVSPVQISFFSVKTHIFNNYRNDFLFSTLLPQEQKVHIREKPYGCNEHGKVFRV
SSSLTNRQVIHIADKTYKCSDCGEIFSSNSNFAQHQRIHTGEKPYKYNECGKVFNQNSHLAQHQKIHTGQ
KPYNNKECGKVFSHHAYLAQHRKIHTGEKPYKCSECGKAFSVCSSLTAHLVIHTGEKPYDCKECGKVFRH
KSSLTTHQTVHTGERPYKCNECGKGFSRIAFLARHRKVHTGEKPYKCNECGKVFIGNSRLARHRKIHTGG
RRYKCNECGKAFRTCSDLTAHLLIHTGEKPYECIDCGKVFRHKSSLTYHCRIHTGEKPYKCNECGKVFSQ
NSNLQRHRKIHTGEKLYKCNECGKVFRQNSHLAQHRDIHTGEKPYSCNECGKVFRRNSHLVRHRNVHTGE
KPYSCNECGKVFSRNSHLARHRNIHTGEKPHSCNECGKVFSRNSHLARHRKIHTGEKLYKCNECSKVFSR
NSRLAQHRNIHTGVKPYSCNECGKVFSKNSILVQHCSIHTREKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH