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Report for CCDS46232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46232.1 Public Homo sapiens 2 DNMT3A 24 110 108 CCDS HistoryNCBI Gene:1788Re-query CCDS DB by CCDS ID:46232.1Re-query CCDS DB by GeneID:1788See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406659.3 ENSP00000384852.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406659.3Link to Ensembl Protein Viewer:ENSP00000384852.3Re-query CCDS DB by Nucleotide ID:ENST00000406659Re-query CCDS DB by Protein ID:ENSP00000384852
Original member Current member NCBI NM_001320892.2 NP_001307821.1 Accepted alive Link to Nucleotide Sequence:NM_001320892.2Link to Protein Sequence:NP_001307821.1Re-query CCDS DB by Nucleotide ID:NM_001320892Re-query CCDS DB by Protein ID:NP_001307821Link to BLAST:NP_001307821.1
Original member Current member NCBI NM_175630.1 NP_783329.1 Accepted alive Link to Nucleotide Sequence:NM_175630.1Link to Protein Sequence:NP_783329.1Re-query CCDS DB by Nucleotide ID:NM_175630Re-query CCDS DB by Protein ID:NP_783329Link to BLAST:NP_783329.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307821.1 166 Q9Y6K1-3 166 100% 0 0
NP_783329.1 166 Q9Y6K1-3 166 100% 0 0

Chromosomal Locations for CCDS 46232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25282388 25282711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25300139 25300243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25313913 25313984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGCCCGCCATGCCCTCCAGCGGCCCCGGGGACACCAGCAGCTCTGCTGCGGAGCGGGAGGAGGACCGAA
AGGACGGAGAGGAGCAGGAGGAGCCGCGTGGCAAGGAGGAGCGCCAAGAGCCCAGCACCACGGCACGGAA
GGTGGGGCGGCCTGGGAGGAAGCGCAAGCACCCCCCGGTGGAAAGCGGTGACACGCCAAAGGACCCTGCG
GTGATCTCCAAGTCCCCATCCATGGCCCAGGACTCAGGCGCCTCAGAGCTATTACCCAATGGGGACTTGG
AGAAGCGGAGTGAGCCCCAGCCAGAGGAGGGGAGCCCTGCTGGGGGGCAGAAGGGCGGGGCCCCAGCAGA
GGGAGAGGGTGCAGCTGAGACCCTGCCTGAAGCCTCAAGAGCAGTGGAAAATGGCTGCTGCACCCCCAAG
GAGGGCCGAGGAGCCCCTGCAGAAGCGGGTGAGTCCTCAGCACCAGGGGCAGCCTCTTCTGGGCCCACCA
GCATACCCTGA

Translation (166 aa):
MPAMPSSGPGDTSSSAAEREEDRKDGEEQEEPRGKEERQEPSTTARKVGRPGRKRKHPPVESGDTPKDPA
VISKSPSMAQDSGASELLPNGDLEKRSEPQPEEGSPAGGQKGGAPAEGEGAAETLPEASRAVENGCCTPK
EGRGAPAEAGESSAPGAASSGPTSIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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