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Report for CCDS46250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46250.1 Public Homo sapiens 2 GPN1 24 110 108 CCDS HistoryNCBI Gene:11321Re-query CCDS DB by CCDS ID:46250.1Re-query CCDS DB by GeneID:11321See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424214.5 ENSP00000398115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424214.5Link to Ensembl Protein Viewer:ENSP00000398115.1Re-query CCDS DB by Nucleotide ID:ENST00000424214Re-query CCDS DB by Protein ID:ENSP00000398115
Original member Current member EBI ENST00000515877.5 ENSP00000424678.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515877.5Link to Ensembl Protein Viewer:ENSP00000424678.1Re-query CCDS DB by Nucleotide ID:ENST00000515877Re-query CCDS DB by Protein ID:ENSP00000424678
Original member Current member NCBI NM_001145048.2 NP_001138520.1 Accepted alive Link to Nucleotide Sequence:NM_001145048.2Link to Protein Sequence:NP_001138520.1Re-query CCDS DB by Nucleotide ID:NM_001145048Re-query CCDS DB by Protein ID:NP_001138520Link to BLAST:NP_001138520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138520.1 295 Q9HCN4-2 295 100% 0 0

Chromosomal Locations for CCDS 46250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27631059 27631066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27631834 27631900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27632633 27632670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27634846 27634924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27635140 27635234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27638210 27638255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27638885 27639031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27640043 27640125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27641240 27641279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27642429 27642519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27647836 27647943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27650115 27650200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGAAACAATATGGACTTGGACCCAATGGCGGCATAGTGACCTCACTCAATCTCTTTGCTACCAGATTTG
ATCAGGTGATGAAATTTATTGAGAAGGCCCAGAACATGTCCAAATATGTGTTGATTGACACACCTGGACA
GATTGAGGTATTCACCTGGTCAGCTTCTGGGACAATTATCACTGAAGCCCTTGCATCCTCATTTCCAACA
GTTGTCATCTATGTAATGGACACATCGAGAAGTACCAACCCAGTGACCTTCATGTCCAACATGCTCTATG
CCTGCAGCATCTTATACAAAACCAAGCTGCCTTTCATTGTGGTCATGAATAAAACTGACATCATTGACCA
CAGCTTTGCAGTGGAATGGATGCAGGATTTTGAGGCTTTCCAAGATGCCTTGAATCAAGAGACTACATAC
GTCAGTAACCTGACTCGTTCAATGAGCCTGGTGTTAGATGAGTTTTACAGCTCACTCAGGGTGGTGGGTG
TCTCTGCTGTTCTGGGTACTGGATTAGATGAACTCTTTGTGCAAGTTACCAGTGCTGCCGAAGAATATGA
AAGGGAGTATCGTCCTGAATATGAACGTCTGAAAAAATCACTGGCCAACGCAGAGAGCCAACAGCAGAGA
GAACAACTGGAACGCCTTCGAAAAGATATGGGTTCTGTAGCCTTGGATGCAGGGACTGCCAAAGACAGCT
TATCTCCTGTGCTGCACCCTTCTGATTTGATCCTGACTCGAGGAACCTTGGATGAAGAGGATGAGGAAGC
AGACAGCGATACTGATGACATTGACCACAGAGTTACAGAGGAAAGCCATGAAGAGCCAGCATTCCAGAAT
TTTATGCAAGAATCGATGGCACAATACTGGAAGAGAAACAATAAATAG

Translation (295 aa):
MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPT
VVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTY
VSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQR
EQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQN
FMQESMAQYWKRNNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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