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Report for CCDS46261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46261.1 Public Homo sapiens 2 HNRNPLL 24 110 108 CCDS HistoryNCBI Gene:92906Re-query CCDS DB by CCDS ID:46261.1Re-query CCDS DB by GeneID:92906See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409636.5 ENSP00000387088.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409636.5Link to Ensembl Protein Viewer:ENSP00000387088.1Re-query CCDS DB by Nucleotide ID:ENST00000409636Re-query CCDS DB by Protein ID:ENSP00000387088
Original member Current member NCBI NM_001142650.2 NP_001136122.1 Accepted alive Link to Nucleotide Sequence:NM_001142650.2Link to Protein Sequence:NP_001136122.1Re-query CCDS DB by Nucleotide ID:NM_001142650Re-query CCDS DB by Protein ID:NP_001136122Link to BLAST:NP_001136122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136122.1 537 Q8WVV9-4 537 100% 0 0

Chromosomal Locations for CCDS 46261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38564182 38564237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38568199 38568297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38568386 38568443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38569133 38569334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38569804 38569925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38573210 38573427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38577461 38577532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38581913 38581985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38582072 38582168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38583841 38583926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38585644 38585881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38591530 38591648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38602438 38602600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38602857 38602867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGTTGGCTCGGGAGACGTACGAGGAGGACCGGGAGTACGAGAGCCAGGCCAAGCGTCTCAAGACCGAGG
AGGGGGAGATCGACTACTCGGCCGAGGAAGGCGAGAACCGCCGGGAAGCGACGCCCCGGGGCGGGGGCGA
TGGCGGCGGCGGCGGCCGGAGCTTCTCTCAGCCGGAGGCAGGTGGAAGTCATCATAAAGTTTCTGTTTCA
CCCGTCGTCCATGTTCGAGGACTCTGTGAATCTGTGGTGGAAGCAGACCTCGTGGAAGCGCTGGAAAAAT
TTGGGACAATATGCTATGTGATGATGATGCCATTTAAACGACAGGCTCTAGTGGAATTTGAAAACATAGA
TAGTGCCAAAGAATGTGTGACATTTGCTGCAGATGAACCCGTGTACATTGCTGGTCAACAGGCTTTTTTC
AACTATTCTACAAGCAAAAGGATCACTCGGCCAGGAAATACTGATGATCCATCAGGAGGCAACAAAGTTC
TTCTGCTCTCAATTCAGAATCCGCTTTATCCAATTACAGTGGATGTTTTATATACTGTATGCAACCCTGT
TGGCAAAGTGCAACGTATTGTTATATTCAAGAGAAATGGGATACAAGCAATGGTTGAGTTTGAATCAGTC
CTTTGTGCCCAGAAAGCTAAAGCAGCACTCAATGGAGCTGATATATATGCTGGATGTTGCACACTAAAAA
TTGAATATGCACGGCCAACTCGTCTAAATGTTATTAGGAATGACAATGACAGTTGGGACTACACTAAACC
ATATTTGGGAAGACGAGATAGAGGAAAGGGTCGCCAGAGACAAGCCATTTTGGGAGAACACCCTTCTTCG
TTTAGACATGATGGCTATGGATCCCATGGTCCATTATTGCCTTTACCAAGTCGTTACAGAATGGGCTCTC
GAGATACACCTGAACTTGTTGCTTATCCATTACCACAGGCTTCTTCCTCTTACATGCATGGAGGAAATCC
CTCTGGTTCAGTTGTAATGGTTAGTGGATTACATCAACTAAAAATGAATTGTTCAAGAGTCTTCAACCTG
TTCTGCTTATATGGAAATATTGAGAAGGTAAAATTTATGAAGACCATTCCTGGTACAGCACTGGTAGAAA
TGGGTGATGAGTATGCTGTAGAAAGAGCTGTCACACACCTTAATAATGTCAAATTATTTGGGAAAAGACT
TAATGTTTGCGTGTCTAAACAACATTCAGTTGTTCCAAGTCAAATATTTGAGCTGGAGGATGGTACCAGC
AGCTACAAAGATTTTGCAATGAGCAAAAATAATCGCTTTACAAGTGCTGGCCAAGCATCTAAGAATATAA
TCCAGCCACCCTCCTGTGTTTTGCATTATTATAATGTTCCATTGTGTGTCACAGAAGAGACCTTCACAAA
GTTGTGTAATGACCATGAAGTTCTTACATTCATCAAATATAAAGTGTTTGATGCAAAACCTTCAGCCAAA
ACACTTTCTGGGCTATTAGAATGGGAGTGCAAAACTGATGCAGTAGAAGCCCTTACGGCACTGAATCACT
ATCAGATAAGAGTGCCGAATGGTTCCAATCCCTATACATTGAAGCTTTGCTTTTCTACATCATCCCATTT
ATAA

Translation (537 aa):
MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSHHKVSVS
PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFF
NYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV
LCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSS
FRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNL
FCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTS
SYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAK
TLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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