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Report for CCDS46423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46423.1 Public Homo sapiens 2 LYPD6B 24 110 108 CCDS HistoryNCBI Gene:130576Re-query CCDS DB by CCDS ID:46423.1Re-query CCDS DB by GeneID:130576See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46423.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409642.8 ENSP00000387077.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409642.8Link to Ensembl Protein Viewer:ENSP00000387077.3Re-query CCDS DB by Nucleotide ID:ENST00000409642Re-query CCDS DB by Protein ID:ENSP00000387077
Original member Current member NCBI NM_001317002.2 NP_001303931.1 Accepted alive Link to Nucleotide Sequence:NM_001317002.2Link to Protein Sequence:NP_001303931.1Re-query CCDS DB by Nucleotide ID:NM_001317002Re-query CCDS DB by Protein ID:NP_001303931Link to BLAST:NP_001303931.1
Original member Current member NCBI NM_177964.5 NP_808879.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177964.5Link to Protein Sequence:NP_808879.2Re-query CCDS DB by Nucleotide ID:NM_177964Re-query CCDS DB by Protein ID:NP_808879Link to BLAST:NP_808879.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303931.1 207 Q8NI32-2 207 100% 0 0
NP_808879.2 207 Q8NI32-2 207 100% 0 0

Chromosomal Locations for CCDS 46423.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 149130949 149130953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149160764 149160835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149205253 149205404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149208314 149208412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149212992 149213122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149214546 149214710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGTTGCTGATTACTCTGAGTGCAAACCTTTTCACTGTTCCAGAGAGGAGCCTGACAACCACATTCTCCT
TCTCAAGATATAAGAGTTCGGACCGCCCAGCACACAAGGTCAGCATGCTGCTCCTCTGTCACGCTCTCGC
TATAGCTGTTGTCCAGATCGTTATCTTCTCAGAAAGCTGGGCATTTGCCAAGAACATCAACTTCTATAAT
GTGAGGCCTCCTCTCGACCCTACACCATTTCCAAATAGCTTCAAGTGCTTTACTTGTGAAAACGCAGGGG
ATAATTATAACTGCAATCGATGGGCAGAAGACAAATGGTGTCCACAAAATACACAGTACTGTTTGACAGT
TCATCACTTCACCAGCCACGGAAGAAGCACATCCATCACCAAAAAGTGTGCCTCCAGAAGTGAATGTCAT
TTTGTCGGTTGCCACCACAGCCGAGATTCTGAACATACGGAGTGTAGGTCTTGCTGTGAAGGAATGATCT
GCAATGTAGAATTACCCACCAATCACACTAATGCAGTGTTTGCCGTAATGCACGCTCAGAGAACATCTGG
CAGCAGTGCCCCCACACTCTACCTACCAGTGCTTGCCTGGGTCTTTGTGCTTCCATTGCTGTGA

Translation (207 aa):
MLLITLSANLFTVPERSLTTTFSFSRYKSSDRPAHKVSMLLLCHALAIAVVQIVIFSESWAFAKNINFYN
VRPPLDPTPFPNSFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRSECH
FVGCHHSRDSEHTECRSCCEGMICNVELPTNHTNAVFAVMHAQRTSGSSAPTLYLPVLAWVFVLPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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