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Report for CCDS46712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46712.1 Public Homo sapiens 22 TNRC6B 24 110 108 CCDS HistoryNCBI Gene:23112Re-query CCDS DB by CCDS ID:46712.1Re-query CCDS DB by GeneID:23112See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46712.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301923.13 ENSP00000306759.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301923.13Link to Ensembl Protein Viewer:ENSP00000306759.9Re-query CCDS DB by Nucleotide ID:ENST00000301923Re-query CCDS DB by Protein ID:ENSP00000306759
Original member Current member EBI ENST00000402203.5 ENSP00000384795.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402203.5Link to Ensembl Protein Viewer:ENSP00000384795.1Re-query CCDS DB by Nucleotide ID:ENST00000402203Re-query CCDS DB by Protein ID:ENSP00000384795
Original member Current member NCBI NM_001024843.2 NP_001020014.1 Accepted alive Link to Nucleotide Sequence:NM_001024843.2Link to Protein Sequence:NP_001020014.1Re-query CCDS DB by Nucleotide ID:NM_001024843Re-query CCDS DB by Protein ID:NP_001020014Link to BLAST:NP_001020014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020014.1 1029 Q9UPQ9-2 1029 100% 0 0

Chromosomal Locations for CCDS 46712.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 40125818 40125862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40156115 40156182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40246015 40246102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40251179 40251200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40261832 40262173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40270122 40270280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40273425 40273600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40277077 40277151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40277999 40278044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40279995 40280143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40285645 40285770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40300455 40300586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40300910 40301005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40301150 40301333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40308512 40308649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40310817 40310993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40312505 40312651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40312902 40312997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40315283 40315507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40315942 40316012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40321090 40321229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40322854 40323241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3090 nt):
ATGCAAACCAATGAGGGAGAAGTATCGGAAGAAAGCAGTTCCAAGGTGGAACAGGAGGATTTTGTAATGG
AAGGGCATGGCAAGACTCCACCTCCTGGTGAAGAAAGCAAACAAGAGAAGGAGCAAGAAAGGGAAGAACA
GTTAATGGAAGACAAGAAAAGGAAGAAAGAGGATAAAAAGAAAAAAGAAGCCACTCAGAAGGTCACGGAA
CAAAAAACCAAAGTGCCCGAAGTGACGAAACCAAGTTTAAGCCAACCAACGGCCGCCAGCCCAATTGGCA
GCTCTCCATCGCCACCAGTCAATGGTGGCAACAATGCCAAAAGGGTGGCAGTGCCGAACGGACAACCGCC
AAGCGCCGCCCGCTACATGCCTCGGGAGGTGCCGCCGCGATTCCGTTGCCAGCAGGACCACAAAGTGTTA
CTAAAACGTGGGCAGCCCCCTCCACCGTCCTGCATGCTCCTTGGGGGTGGGGCAGGGCCTCCTCCCTGCA
CAGCACCTGGAGCAAACCCAAACAACGCACAAGTGACAGGAGCGCTGCTGCAGAGTGAGAGTGGGACTGC
GCCAGTCTGGAGCAAAAGCACACCACCTGCTCCAGATAATGGTACTTCCGCTTGGGGTGAGCCAAATGAA
AGCAGTCCTGGGTGGGGCGAGATGGATGATACAGGAGCATCGACCACAGGCTGGGGGAACACGCCCGCCA
ACGCTCCCAATGCCATGAAGCCTAATTCCAAATCTATGCAAGACGGCTGGGGGGAGAGTGACGGGCCAGT
CACAGGAGCTCGCCATCCCAGCTGGGAAGAGGAGGAGGATGGAGGAGTCTGGAACACCACTGGCTCTCAG
GGCAGTGCTTCCTCCCACAACTCAGCAAGCTGGGGACAAGGAGGAAAGAAACAAATGAAGTGCTCACTCA
AAGGAGGAAACAATGATTCATGGATGAATCCTCTTGCCAAACAGTTTTCAAATATGGGATTGCTGAGTCA
GACTGAAGATAATCCAAGCAGCAAAATGGATTTGTCTGTAGGAAGCCTTTCAGATAAAAAATTTGATGTG
GACAAGCGAGCGATGAATCTCGGGGATTTTAATGATATCATGAGGAAGGATCGATCTGGGTTCCGTCCAC
CTAATTCCAAAGACATGGGAACCACAGATAGTGGGCCTTATTTTGAGAAGGGCGGTAGTCATGGTTTGTT
TGGAAACAGCACAGCACAATCGAGAGGTCTGCACACACCCGTGCAGCCACTAAATTCTTCTCCCAGTCTC
CGGGCGCAAGTGCCTCCCCAGTTTATTTCCCCCCAGGTTTCTGCCTCAATGCTCAAGCAGTTTCCCAACA
GTGGCCTGAGTCCAGGTCTTTTCAATGTGGGGCCCCAGTTATCTCCTCAACAAATTGCCATGCTGAGCCA
GCTTCCACAAATTCCCCAGTTTCAGTTGGCATGTCAGCTTCTCTTGCAGCAGCAGCAACAGCAGCAGTTG
TTACAGAACCAGAGAAAGATTTCTCAAGCTGTACGCCAACAGCAAGAGCAGCAGCTGGCTCGAATGGTGA
GTGCACTGCAGCAGCAGCAGCAGCAGCAGCAGAGGCAGCCAGGCATGAAGCACTCGCCCTCTCATCCTGT
TGGGCCCAAGCCGCATCTGGACAACATGGTACCCAACGCATTGAATGTGGGGCTCCCAGACCTTCAAACC
AAAGGGCCAATACCTGGATATGGTTCTGGCTTCAGCTCTGGCGGCATGGACTATGGCATGGTTGGTGGGA
AGGAGGCTGGAACCGAGTCTCGCTTTAAACAGTGGACCTCCATGATGGAGGGGCTGCCCTCTGTAGCCAC
ACAGGAAGCCAATATGCACAAAAATGGCGCTATAGTGGCCCCTGGTAAAACCCGGGGAGGGTCACCGTAC
AACCAGTTTGATATCATCCCTGGTGACACACTGGGTGGCCATACGGGTCCTGCTGGTGATAGCTGGTTAC
CTGCCAAATCTCCACCAACAAATAAAATCGGAAGTAAATCCAGCAATGCCAGTTGGCCTCCAGAATTCCA
ACCAGGAGTGCCATGGAAAGGTATCCAAAACATTGACCCTGAATCTGACCCCTATGTCACCCCAGGAAGT
GTGCTGGGGGGTACAGCCACATCTCCCATTGTAGATACTGACCACCAACTGCTGCGGGATAACACCACAG
GGTCTAATTCTTCCCTCAACACCTCGCTGCCTTCACCTGGTGCCTGGCCCTACAGTGCCTCTGACAACTC
CTTTACCAACGTTCATAGCACTTCAGCAAAGTTCCCTGATTACAAATCAACATGGTCCCCAGATCCCATA
GGACACAACCCCACTCATCTCTCCAACAAGATGTGGAAAAACCATATTTCCTCCAGGAACACTACACCGC
TGCCCCGCCCACCTCCTGGTCTGACCAACCCCAAACCATCATCTCCCTGGAGCAGCACAGCACCCCGATC
AGTCAGGGGGTGGGGGACACAGGACTCACGGCTCGCCTCGGCCTCTACCTGGAGTGATGGTGGCTCAGTT
CGTCCTAGTTACTGGCTGGTTCTTCACAATCTCACCCCACAGATTGATGGGTCAACCTTGAGAACGATCT
GCATGCAGCATGGCCCACTGCTGACATTCCATCTGAATCTAACCCAGGGCACTGCCCTGATCCGATACAG
CACCAAACAGGAGGCGGCCAAGGCCCAAACTGCACTGCACATGTGTGTGTTGGGAAACACTACCATCCTT
GCTGAGTTTGCCACTGATGATGAAGTCAGCCGCTTTCTGGCACAAGCTCAGCCCCCTACACCTGCAGCAA
CCCCAAGTGCGCCAGCTGCGGGGTGGCAGTCGCTGGAGACCGGCCAGAACCAGTCAGATCCCGTGGGACC
TGCTCTGAATCTTTTTGGTGGGTCCACTGGGCTCGGGCAGTGGAGCAGCAGCGCTGGTGGCAGCAGCGGG
GCCGATCTTGCTGGCGCTTCATTGTGGGGGCCCCCAAACTATTCTTCTAGCTTATGGGGAGTCCCAACGG
TGGAAGATCCCCATAGGATGGGCAGCCCTGCTCCTTTACTACCTGGTGACCTTCTGGGAGGAGGGTCGGA
TTCAATCTGA

Translation (1029 aa):
MQTNEGEVSEESSSKVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKKKKEATQKVTE
QKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNAKRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVL
LKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNAQVTGALLQSESGTAPVWSKSTPPAPDNGTSAWGEPNE
SSPGWGEMDDTGASTTGWGNTPANAPNAMKPNSKSMQDGWGESDGPVTGARHPSWEEEEDGGVWNTTGSQ
GSASSHNSASWGQGGKKQMKCSLKGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVGSLSDKKFDV
DKRAMNLGDFNDIMRKDRSGFRPPNSKDMGTTDSGPYFEKGGSHGLFGNSTAQSRGLHTPVQPLNSSPSL
RAQVPPQFISPQVSASMLKQFPNSGLSPGLFNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQQQQQQQL
LQNQRKISQAVRQQQEQQLARMVSALQQQQQQQQRQPGMKHSPSHPVGPKPHLDNMVPNALNVGLPDLQT
KGPIPGYGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMMEGLPSVATQEANMHKNGAIVAPGKTRGGSPY
NQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGS
VLGGTATSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPI
GHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPSSPWSSTAPRSVRGWGTQDSRLASASTWSDGGSV
RPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTIL
AEFATDDEVSRFLAQAQPPTPAATPSAPAAGWQSLETGQNQSDPVGPALNLFGGSTGLGQWSSSAGGSSG
ADLAGASLWGPPNYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGSDSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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