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Report for CCDS46743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46743.1 Public Homo sapiens 3 ARPC4 24 110 108 CCDS HistoryNCBI Gene:10093Re-query CCDS DB by CCDS ID:46743.1Re-query CCDS DB by GeneID:10093See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 46743.1
This CCDS represents a variant of the ARPC4 locus, and is supported by EST data, including BI768875.1, BQ688329.1, BU161393.1 and BG938423.1. A variant encoding a longer protein is represented by CCDS43047.1.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46743.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000498623.6 ENSP00000432235.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498623.6Link to Ensembl Protein Viewer:ENSP00000432235.1Re-query CCDS DB by Nucleotide ID:ENST00000498623Re-query CCDS DB by Protein ID:ENSP00000432235
Original member Current member NCBI NM_001024959.3 NP_001020130.1 Accepted alive Link to Nucleotide Sequence:NM_001024959.3Link to Protein Sequence:NP_001020130.1Re-query CCDS DB by Nucleotide ID:NM_001024959Re-query CCDS DB by Protein ID:NP_001020130Link to BLAST:NP_001020130.1
Original member Current member NCBI NM_001024960.3 NP_001020131.1 Accepted alive Link to Nucleotide Sequence:NM_001024960.3Link to Protein Sequence:NP_001020131.1Re-query CCDS DB by Nucleotide ID:NM_001024960Re-query CCDS DB by Protein ID:NP_001020131Link to BLAST:NP_001020131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020130.1 78 P59998-4 78 100% 0 0
NP_001020131.1 78 P59998-4 78 100% 0 0

Chromosomal Locations for CCDS 46743.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9801697 9801756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9803843 9804013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9806210 9806215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (237 nt):
ATGCGCTTCATGATGATGCGAGCAGAGAACTTCTTTATCCTTCGAAGGAAGCCTGTGGAGGGGTATGATA
TCAGCTTTCTGATCACCAACTTCCACACAGAGCAGATGTACAAACACAAGTTGGTGGACTTTGTGATCCA
CTTCATGGAGGAGATTGACAAGGAGATCAGTGAGATGAAGCTGTCAGTCAATGCCCGTGCCCGCATTGTG
GCTGAAGAGTTCCTTAAGAATTTTTAA

Translation (78 aa):
MRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIV
AEEFLKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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