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Report for CCDS46775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46775.1 Public Homo sapiens 3 RARB 24 110 108 CCDS HistoryNCBI Gene:5915Re-query CCDS DB by CCDS ID:46775.1Re-query CCDS DB by GeneID:5915See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 46775.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458646.2 ENSP00000391391.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458646.2Link to Ensembl Protein Viewer:ENSP00000391391.1Re-query CCDS DB by Nucleotide ID:ENST00000458646Re-query CCDS DB by Protein ID:ENSP00000391391
Original member Current member EBI ENST00000437042.7 ENSP00000398840.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437042.7Link to Ensembl Protein Viewer:ENSP00000398840.2Re-query CCDS DB by Nucleotide ID:ENST00000437042Re-query CCDS DB by Protein ID:ENSP00000398840
Original member Current member EBI ENST00000693261.1 ENSP00000508421.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693261.1Link to Ensembl Protein Viewer:ENSP00000508421.1Re-query CCDS DB by Nucleotide ID:ENST00000693261Re-query CCDS DB by Protein ID:ENSP00000508421
Original member Current member NCBI NM_001290217.2 NP_001277146.1 Accepted alive Link to Nucleotide Sequence:NM_001290217.2Link to Protein Sequence:NP_001277146.1Re-query CCDS DB by Nucleotide ID:NM_001290217Re-query CCDS DB by Protein ID:NP_001277146Link to BLAST:NP_001277146.1
Original member Current member NCBI NM_001290276.2 NP_001277205.1 Accepted alive Link to Nucleotide Sequence:NM_001290276.2Link to Protein Sequence:NP_001277205.1Re-query CCDS DB by Nucleotide ID:NM_001290276Re-query CCDS DB by Protein ID:NP_001277205Link to BLAST:NP_001277205.1
Original member Current member NCBI NM_016152.4 NP_057236.1 Accepted alive Link to Nucleotide Sequence:NM_016152.4Link to Protein Sequence:NP_057236.1Re-query CCDS DB by Nucleotide ID:NM_016152Re-query CCDS DB by Protein ID:NP_057236Link to BLAST:NP_057236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277146.1 336 P10826-3 336 100% 0 0
NP_001277205.1 336 P10826-3 336 100% 0 0
NP_057236.1 336 P10826-3 336 100% 0 0

Chromosomal Locations for CCDS 46775.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 25501212 25501323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25569758 25569918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25580546 25580722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25593503 25593707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25594520 25594678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 25596420 25596616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGATTTACACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACT
GTCGACTCCAGAAGTGCTTTGAAGTGGGAATGTCCAAAGAATCTGTCAGGAATGACAGGAACAAGAAAAA
GAAGGAGACTTCGAAGCAAGAATGCACAGAGAGCTATGAAATGACAGCTGAGTTGGACGATCTCACAGAG
AAGATCCGAAAAGCTCACCAGGAAACTTTCCCTTCACTCTGCCAGCTGGGTAAATACACCACGAATTCCA
GTGCTGACCATCGAGTCCGACTGGACCTGGGCCTCTGGGACAAATTCAGTGAACTGGCCACCAAGTGCAT
TATTAAGATCGTGGAGTTTGCTAAACGTCTGCCTGGTTTCACTGGCTTGACCATCGCAGACCAAATTACC
CTGCTGAAGGCCGCCTGCCTGGACATCCTGATTCTTAGAATTTGCACCAGGTATACCCCAGAACAAGACA
CCATGACTTTCTCAGACGGCCTTACCCTAAATCGAACTCAGATGCACAATGCTGGATTTGGTCCTCTGAC
TGACCTTGTGTTCACCTTTGCCAACCAGCTCCTGCCTTTGGAAATGGATGACACAGAAACAGGCCTTCTC
AGTGCCATCTGCTTAATCTGTGGAGACCGCCAGGACCTTGAGGAACCGACAAAAGTAGATAAGCTACAAG
AACCATTGCTGGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAGCAAGCCTCACATGTTTCCAAA
GATCTTAATGAAAATCACAGATCTCCGTAGCATCAGTGCTAAAGGTGCAGAGCGTGTAATTACCTTGAAA
ATGGAAATTCCTGGATCAATGCCACCTCTCATTCAAGAAATGCTGGAGAATTCTGAAGGACATGAACCCT
TGACCCCAAGTTCAAGTGGGAACACAGCAGAGCACAGTCCTAGCATCTCACCCAGCTCAGTGGAAAACAG
TGGGGTCAGTCAGTCACCACTCGTGCAATAA

Translation (336 aa):
MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKETSKQECTESYEMTAELDDLTE
KIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQIT
LLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLL
SAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLK
MEIPGSMPPLIQEMLENSEGHEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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