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Report for CCDS46823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46823.1 Public Homo sapiens 3 TMA7 24 110 108 CCDS HistoryNCBI Gene:51372Re-query CCDS DB by CCDS ID:46823.1Re-query CCDS DB by GeneID:51372See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46823.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438607.2 ENSP00000397843.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438607.2Link to Ensembl Protein Viewer:ENSP00000397843.2Re-query CCDS DB by Nucleotide ID:ENST00000438607Re-query CCDS DB by Protein ID:ENSP00000397843
Original member Current member NCBI NM_015933.6 NP_057017.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015933.6Link to Protein Sequence:NP_057017.1Re-query CCDS DB by Nucleotide ID:NM_015933Re-query CCDS DB by Protein ID:NP_057017Link to BLAST:NP_057017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057017.1 64 Q9Y2S6 64 100% 0 0

Chromosomal Locations for CCDS 46823.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48440297 48440312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48440403 48440458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48440541 48440628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48443848 48443882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (195 nt):
ATGTCCGGCCGCGAAGGTGGCAAGAAGAAGCCACTGAAACAGCCCAAGAAGCAGGCCAAGGAGATGGACG
AGGAAGATAAGGCTTTCAAGCAGAAACAAAAAGAGGAGCAGAAGAAACTCGAGGAGCTAAAAGCGAAGGC
CGCGGGGAAGGGGCCCTTGGCCACAGGTGGAATTAAGAAATCTGGCAAAAAGTAA

Translation (64 aa):
MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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