NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46825.1 Public Homo sapiens 3 SLC26A6 24 110 108 CCDS HistoryNCBI Gene:65010Re-query CCDS DB by CCDS ID:46825.1Re-query CCDS DB by GeneID:65010See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46825.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420764.6 ENSP00000404684.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420764.6Link to Ensembl Protein Viewer:ENSP00000404684.2Re-query CCDS DB by Nucleotide ID:ENST00000420764Re-query CCDS DB by Protein ID:ENSP00000404684
Original member Current member NCBI NM_134263.3 NP_599025.2 Accepted alive Link to Nucleotide Sequence:NM_134263.3Link to Protein Sequence:NP_599025.2Re-query CCDS DB by Nucleotide ID:NM_134263Re-query CCDS DB by Protein ID:NP_599025Link to BLAST:NP_599025.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599025.2 758 Q9BXS9-3 758 100% 0 0

Chromosomal Locations for CCDS 46825.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48625986 48626000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48626218 48626354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48626631 48626685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48626876 48627052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48627946 48628038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48628434 48628541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48628622 48628714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48629642 48629711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48629872 48629978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48630062 48630157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48630438 48630515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48630607 48630720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48630993 48631140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48631224 48631306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48631649 48631801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48631880 48632044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48632245 48632396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48632974 48633084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48633251 48633390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48633477 48633635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48635371 48635393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGGGGCTGGCGGATGCGTCGGGACCGAGGGACACACAGGCACTGCTGTCTGCAACACAAGCAATGGACC
TGCGGAGGCGAGACTACCACATGGAACGGCCGCTGCTGAACCAGGAGCATTTGGAGGAGCTGGGGCGCTG
GGGCTCAGCACCTAGGACCCACCAGTGGCGGACCTGGTTGCAGTGCTCCCGTGCTCGGGCCTATGCCCTT
CTGCTCCAACACCTCCCGGTTTTGGTCTGGTTACCCCGGTATCCTGTGCGTGACTGGCTCCTGGGTGACC
TGTTATCCGGCCTGAGTGTGGCCATCATGCAGCTTCCGCAGGGCTTGGCCTACGCCCTCCTGGCTGGATT
GCCCCCCGTGTTTGGCCTCTATAGCTCCTTCTACCCTGTCTTCATCTACTTCCTGTTTGGCACTTCCCGG
CACATCTCCGTGGGGACCTTTGCTGTCATGTCTGTGATGGTGGGCAGTGTGACAGAATCCCTGGCCCCGC
AGGCCTTGAACGACTCCATGATCAATGAGACAGCCAGAGATGCTGCCCGGGTACAGGTGGCCTCCACACT
CAGTGTCCTGGTTGGCCTCTTCCAGGTGGGGCTGGGCCTGATCCACTTCGGCTTCGTGGTCACCTACCTG
TCAGAACCTCTTGTCCGAGGCTATACCACAGCTGCAGCTGTGCAGGTCTTCGTCTCACAGCTCAAGTATG
TGTTTGGCCTCCATCTGAGCAGCCACTCTGGGCCACTGTCCCTCATCTATACAGTGCTGGAGGTCTGCTG
GAAGCTGCCCCAGAGCAAGGTTGGCACCGTGGTCACTGCAGCTGTGGCTGGGGTGGTGCTCGTGGTGGTG
AAGCTGTTGAATGACAAGCTGCAGCAGCAGCTGCCCATGCCGATACCCGGGGAGCTGCTCACGCTCATCG
GGGCCACAGGCATCTCCTATGGCATGGGTCTAAAGCACAGATTTGAGGTAGATGTCGTGGGCAACATCCC
TGCAGGGCTGGTGCCCCCAGTGGCCCCCAACACCCAGCTGTTCTCAAAGCTCGTGGGCAGCGCCTTCACC
ATCGCTGTGGTTGGGTTTGCCATTGCCATCTCACTGGGGAAGATCTTCGCCCTGAGGCACGGCTACCGGG
TGGACAGCAACCAGGAGCTGGTGGCCCTGGGCCTCAGTAACCTTATCGGAGGCATCTTCCAGTGCTTCCC
CGTGAGTTGCTCTATGTCTCGGAGCCTGGTACAGGAGAGCACCGGGGGCAACTCGCAGGTTGCTGGAGCC
ATCTCTTCCCTTTTCATCCTCCTCATCATTGTCAAACTTGGGGAACTCTTCCATGACCTGCCCAAGGCGG
TCCTGGCAGCCATCATCATTGTGAACCTGAAGGGCATGCTGAGGCAGCTCAGCGACATGCGCTCCCTCTG
GAAGGCCAATCGGGCGGATCTGCTTATCTGGCTGGTGACCTTCACGGCCACCATCTTGCTGAACCTGGAC
CTTGGCTTGGTGGTTGCGGTCATCTTCTCCCTGCTGCTCGTGGTGGTCCGGACACAGATGCCCCACTACT
CTGTCCTGGGGCAGGTGCCAGACACGGATATTTACAGAGATGTGGCAGAGTACTCAGAGGCCAAGGAAGT
CCGGGGGGTGAAGGTCTTCCGCTCCTCGGCCACCGTGTACTTTGCCAATGCTGAGTTCTACAGTGATGCG
CTGAAGCAGAGGTGTGGTGTGGATGTCGACTTCCTCATCTCCCAGAAGAAGAAACTGCTCAAGAAGCAGG
AGCAGCTGAAGCTGAAGCAACTGCAGAAAGAGGAGAAGCTTCGGAAACAGGCTGCCTCCCCCAAGGGCGC
CTCAGTTTCCATTAATGTCAACACCAGCCTTGAAGACATGAGGAGCAACAACGTTGAGGACTGCAAGATG
ATGGTGAGCTCAGGAGATAAGATGGAAGATGCAACAGCCAATGGTCAAGAAGACTCCAAGGCCCCAGATG
GGTCCACACTGAAGGCCCTGGGCCTGCCTCAGCCAGACTTCCACAGCCTCATCCTGGACCTGGGTGCCCT
CTCCTTTGTGGACACTGTGTGCCTCAAGAGCCTGAAGAATATTTTCCATGACTTCCGGGAGATTGAGGTG
GAGGTGTACATGGCGGCCTGCCACAGCCCTGTGGTCAGCCAGCTTGAGGCTGGGCACTTCTTCGATGCAT
CCATCACCAAGAAGCATCTCTTTGCCTCTGTCCATGATGCTGTCACCTTTGCCCTCCAACACCCGAGGCC
TGTCCCCGACAGCCCTGTTTCGGTCACCAGACTCTGA

Translation (758 aa):
MGLADASGPRDTQALLSATQAMDLRRRDYHMERPLLNQEHLEELGRWGSAPRTHQWRTWLQCSRARAYAL
LLQHLPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFYPVFIYFLFGTSR
HISVGTFAVMSVMVGSVTESLAPQALNDSMINETARDAARVQVASTLSVLVGLFQVGLGLIHFGFVVTYL
SEPLVRGYTTAAAVQVFVSQLKYVFGLHLSSHSGPLSLIYTVLEVCWKLPQSKVGTVVTAAVAGVVLVVV
KLLNDKLQQQLPMPIPGELLTLIGATGISYGMGLKHRFEVDVVGNIPAGLVPPVAPNTQLFSKLVGSAFT
IAVVGFAIAISLGKIFALRHGYRVDSNQELVALGLSNLIGGIFQCFPVSCSMSRSLVQESTGGNSQVAGA
ISSLFILLIIVKLGELFHDLPKAVLAAIIIVNLKGMLRQLSDMRSLWKANRADLLIWLVTFTATILLNLD
LGLVVAVIFSLLLVVVRTQMPHYSVLGQVPDTDIYRDVAEYSEAKEVRGVKVFRSSATVYFANAEFYSDA
LKQRCGVDVDFLISQKKKLLKKQEQLKLKQLQKEEKLRKQAASPKGASVSINVNTSLEDMRSNNVEDCKM
MVSSGDKMEDATANGQEDSKAPDGSTLKALGLPQPDFHSLILDLGALSFVDTVCLKSLKNIFHDFREIEV
EVYMAACHSPVVSQLEAGHFFDASITKKHLFASVHDAVTFALQHPRPVPDSPVSVTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH