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Report for CCDS46843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46843.1 Public Homo sapiens 3 NT5DC2 24 110 108 CCDS HistoryNCBI Gene:64943Re-query CCDS DB by CCDS ID:46843.1Re-query CCDS DB by GeneID:64943See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46843.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422318.7 ENSP00000406933.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422318.7Link to Ensembl Protein Viewer:ENSP00000406933.2Re-query CCDS DB by Nucleotide ID:ENST00000422318Re-query CCDS DB by Protein ID:ENSP00000406933
Original member Current member NCBI NM_001134231.2 NP_001127703.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001134231.2Link to Protein Sequence:NP_001127703.1Re-query CCDS DB by Nucleotide ID:NM_001134231Re-query CCDS DB by Protein ID:NP_001127703Link to BLAST:NP_001127703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127703.1 557 Q9H857-2 557 100% 0 0

Chromosomal Locations for CCDS 46843.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52524470 52524731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52524817 52524881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52524963 52525103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52525209 52525295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52527294 52527375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52527617 52527718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52527829 52527931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528013 52528073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528183 52528311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528446 52528539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528637 52528692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52528861 52528935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52529150 52529334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52533506 52533737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGCGGGTGCGGGGCTGCGGGCGGCCGCTCGGCGCTGGCTGCTGTGCGGAGGCCACGGCGGGCCGCGAG
CCGCCTCGTCCTCGCCCTCCTGCCCTGGGTGCGGCCCCCCGGGTCCCGGCGCCCACTGCCCCGGCGTCCC
GCGCTCCGCGCCCGCCCAGGCACCCACCAGCGGCGCCGACCTCAGCGCGCACCTATGGGCTCGCTACCAG
GACATGCGGAGACTGGTGCACGACCTCCTGCCCCCCGAGGTCTGCAGTCTCCTGAACCCAGCAGCCATCT
ACGCCAACAACGAGATCAGCCTGCGTGACGTTGAGGTCTACGGCTTTGACTACGACTACACCCTGGCCCA
GTATGCAGACGCACTGCACCCCGAGATCTTCAGTACCGCCCGTGACATCCTGATCGAGCACTACAAGTAC
CCAGAAGGGATTCGGAAGTATGACTACAACCCCAGCTTTGCCATCCGTGGCCTCCACTATGACATTCAGA
AGAGCCTTCTGATGAAGATTGACGCCTTCCACTACGTGCAGCTGGGGACAGCCTACAGGGGCCTCCAGCC
TGTGCCAGACGAGGAGGTGATTGAGCTGTATGGGGGTACCCAGCACATCCCACTATACCAGATGAGTGGC
TTCTATGGCAAGGGTCCCTCCATTAAGCAGTTCATGGACATCTTCTCGCTACCGGAGATGGCTCTGCTGT
CCTGTGTGGTGGACTACTTTCTGGGCCACAGCCTGGAGTTTGACCAAGCACATCTCTACAAGGACGTGAC
GGACGCCATCCGAGACGTGCATGTGAAGGGCCTCATGTACCAGTGGATCGAGCAGGACATGGAGAAGTAC
ATCCTGAGAGGGGATGAGACGTTTGCTGTCCTGAGCCGCCTGGTGGCCCATGGGAAACAGCTGTTCCTCA
TCACCAACAGTCCTTTCAGCTTCGTAGACAAGGGGATGCGGCACATGGTGGGTCCCGATTGGCGCCAGCT
CTTCGATGTGGTCATTGTCCAGGCAGACAAGCCCAGCTTCTTCACTGACCGGCGCAAGCCTTTCAGAAAA
CTCGATGAGAAGGGCTCACTTCAGTGGGACCGGATCACCCGCTTGGAAAAGGGCAAGATCTATCGGCAGG
GAAACCTGTTTGACTTCTTACGCTTGACGGAATGGCGTGGCCCCCGCGTGCTCTACTTCGGGGACCACCT
CTATAGTGATCTGGCGGATCTCATGCTGCGGCACGGCTGGCGCACAGGCGCCATCATCCCCGAGCTGGAG
CGTGAGATCCGCATCATCAACACGGAGCAGTACATGCACTCGCTGACGTGGCAGCAGGCGCTCACGGGGC
TGCTGGAGCGCATGCAGACCTATCAGGACGCGGAGTCGAGGCAGGTGCTGGCTGCCTGGATGAAAGAGCG
GCAGGAGCTGAGGTGCATCACCAAGGCCCTGTTCAATGCGCAGTTCGGCAGCATCTTCCGCACCTTCCAC
AACCCCACCTACTTCTCAAGGCGCCTCGTGCGCTTCTCTGACCTCTACATGGCCTCCCTCAGCTGCCTGC
TCAACTACCGCGTGGACTTCACCTTCTACCCACGCCGTACGCCGCTGCAGCACGAGGCACCCCTCTGGAT
GGACCAGCTCTGCACCGGCTGCATGAAGACCCCCTTCCTTGGTGACATGGCCCACATCCGCTGA

Translation (557 aa):
MAGAGLRAAARRWLLCGGHGGPRAASSSPSCPGCGPPGPGAHCPGVPRSAPAQAPTSGADLSAHLWARYQ
DMRRLVHDLLPPEVCSLLNPAAIYANNEISLRDVEVYGFDYDYTLAQYADALHPEIFSTARDILIEHYKY
PEGIRKYDYNPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDEEVIELYGGTQHIPLYQMSG
FYGKGPSIKQFMDIFSLPEMALLSCVVDYFLGHSLEFDQAHLYKDVTDAIRDVHVKGLMYQWIEQDMEKY
ILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPSFFTDRRKPFRK
LDEKGSLQWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELE
REIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLAAWMKERQELRCITKALFNAQFGSIFRTFH
NPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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