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Report for CCDS46860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46860.1 Public Homo sapiens 3 SYNPR 24 110 108 CCDS HistoryNCBI Gene:132204Re-query CCDS DB by CCDS ID:46860.1Re-query CCDS DB by GeneID:132204See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295894.9 ENSP00000295894.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295894.9Link to Ensembl Protein Viewer:ENSP00000295894.5Re-query CCDS DB by Nucleotide ID:ENST00000295894Re-query CCDS DB by Protein ID:ENSP00000295894
Original member Current member NCBI NM_144642.5 NP_653243.1 Accepted alive Link to Nucleotide Sequence:NM_144642.5Link to Protein Sequence:NP_653243.1Re-query CCDS DB by Nucleotide ID:NM_144642Re-query CCDS DB by Protein ID:NP_653243Link to BLAST:NP_653243.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653243.1 265 Q8TBG9-1 265 100% 0 0

Chromosomal Locations for CCDS 46860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63443446 63443469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63480832 63480956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63556543 63556741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63609125 63609316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63615224 63615481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGTGTATGGTGATATTTGCTCCGCTTTTTGCAATCTTTGCATTTGCAACATGCGGTGGCTATTCTGGAG
GCCTGCGGCTGAGTGTGGACTGCGTCAACAAGACAGAAAGTAACCTCAGCATCGACATAGCGTTTGCCTA
CCCATTCAGGTTGCACCAGGTGACGTTTGAGGTGCCCACCTGCGAGGGAAAGGAACGGCAGAAGCTGGCA
TTGATTGGTGACTCCTCGTCTTCAGCAGAGTTCTTCGTCACTGTTGCTGTCTTCGCCTTCCTCTACTCTT
TGGCTGCCACTGTCGTTTACATTTTCTTCCAGAACAAATACCGGGAAAACAACCGGGGCCCACTCATTGA
CTTCATTGTCACTGTAGTCTTTTCGTTCTTGTGGTTGGTGGGTTCATCAGCTTGGGCAAAAGGACTGTCT
GACGTCAAAGTTGCAACGGATCCCAAGGAAGTATTGCTACTAATGTCAGCTTGCAAACAGCCATCCAACA
AATGCATGGCTATCCACAGCCCTGTTATGTCAAGCTTAAACACTTCTGTGGTCTTTGGATTCTTGAACTT
TATTCTCTGGGCTGGAAACATATGGTTTGTTTTCAAGGAGACCGGCTGGCATTCTTCGGGACAGAGATAT
CTTTCAGATCCAATGGAGAAGCACTCCAGCAGCTATAATCAAGGTGGTTACAACCAAGACAGCTATGGAT
CAAGCAGTGGGTACAGTCAGCAGGCGAGTTTGGGGCCAACCTCAGATGAGTTTGGCCAACAGCCTACTGG
CCCCACTTCCTTTACCAATCAGATTTAA

Translation (265 aa):
MCMVIFAPLFAIFAFATCGGYSGGLRLSVDCVNKTESNLSIDIAFAYPFRLHQVTFEVPTCEGKERQKLA
LIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQNKYRENNRGPLIDFIVTVVFSFLWLVGSSAWAKGLS
DVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSVVFGFLNFILWAGNIWFVFKETGWHSSGQRY
LSDPMEKHSSSYNQGGYNQDSYGSSSGYSQQASLGPTSDEFGQQPTGPTSFTNQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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