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Report for CCDS47009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47009.1 Public Homo sapiens 4 PSAPL1 24 110 108 CCDS HistoryNCBI Gene:768239Re-query CCDS DB by CCDS ID:47009.1Re-query CCDS DB by GeneID:768239See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 47009.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319098.7 ENSP00000317445.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319098.7Link to Ensembl Protein Viewer:ENSP00000317445.4Re-query CCDS DB by Nucleotide ID:ENST00000319098Re-query CCDS DB by Protein ID:ENSP00000317445
Original member Current member NCBI NM_001085382.2 NP_001078851.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085382.2Link to Protein Sequence:NP_001078851.1Re-query CCDS DB by Nucleotide ID:NM_001085382Re-query CCDS DB by Protein ID:NP_001078851Link to BLAST:NP_001078851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078851.1 521 Q6NUJ1 521 100% 0 0

Chromosomal Locations for CCDS 47009.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 7433314 7434879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGCTGTGTGCCCTGCTCCTCCTGCCCAGCCTCCTGGGGGCCACCAGGGCCAGCCCCACCTCAGGCCCCC
AGGAGTGTGCAAAGGGCTCCACGGTGTGGTGTCAGGATCTGCAGACAGCTGCCAGGTGCGGGGCTGTGGG
GTACTGCCAAGGGGCCGTATGGAACAAACCCACCGCGAAGTCTCTGCCCTGCGACGTATGCCAGGACATA
GCAGCCGCCGCTGGCAATGGGCTGAACCCTGACGCCACGGAGTCTGACATCCTGGCTTTGGTGATGAAGA
CCTGTGAGTGGCTCCCCAGCCAGGAGTCTTCAGCCGGATGCAAGTGGATGGTGGATGCCCACAGTTCGGC
CATCCTGAGCATGCTCCGTGGGGCCCCGGACAGTGCCCCGGCACAGGTGTGCACAGCGCTCAGCCTCTGT
GAGCCGCTGCAGAGGCACCTGGCCACCCTGAGGCCACTCTCCAAAGAGGACACCTTTGAGGCTGTGGCTC
CGTTCATGGCCAATGGGCCCCTTACCTTCCACCCCCGCCAGGCGCCTGAAGGAGCTCTGTGCCAAGACTG
TGTACGGCAGGTCTCCCGACTCCAGGAGGCTGTCCGGTCCAACTTGACCTTGGCCGACTTGAACATCCAG
GAGCAGTGTGAGTCCTTGGGGCCTGGCCTGGCCGTCCTCTGCAAGAACTACCTCTTCCAGTTTTTTGTCC
CTGCTGACCAAGCACTGAGGCTTCTCCCCCCGCAGGAGCTCTGCAGGAAGGGGGGATTCTGTGAGGAGCT
AGGGGCACCTGCCCGTTTGACTCAAGTAGTGGCCATGGACGGGGTCCCCTCCCTGGAGCTGGGGTTGCCA
AGGAAACAGAGCGAGATGCAGATGAAGGCCGGTGTGACCTGTGAGGTGTGCATGAACGTGGTGCAGAAGC
TGGACCACTGGCTCATGTCCAACAGCTCTGAGCTCATGATCACCCATGCCCTGGAGCGCGTGTGCTCGGT
AATGCCTGCCTCTATCACGAAGGAGTGCATCATCTTGGTGGACACCTACAGCCCCTCCTTGGTGCAGCTT
GTGGCCAAAATCACCCCAGAGAAGGTGTGCAAGTTCATCCGTCTGTGTGGCAACCGGAGGCGGGCCCGGG
CAGTCCATGATGCCTATGCCATCGTGCCGTCCCCAGAGTGGGACGCGGAGAACCAGGGCAGCTTCTGCAA
TGGGTGCAAGAGGCTGCTCACGGTGTCCTCCCACAACTTGGAGAGCAAGAGCACCAAGCGAGACATCCTG
GTGGCCTTCAAGGGTGGCTGCAGCATCCTGCCGCTGCCCTATATGATCCAGTGCAAGCACTTCGTCACCC
AGTACGAGCCCGTGCTCATTGAGAGTCTCAAGGACATGATGGACCCCGTGGCTGTGTGCAAGAAGGTGGG
GGCCTGCCACGGCCCCAGGACCCCACTGCTGGGCACCGACCAGTGTGCCCTGGGCCCAAGCTTCTGGTGC
AGGAGCCAGGAGGCCGCCAAGCTGTGCAACGCTGTGCAACACTGCCAGAAGCATGTATGGAAAGAGATGC
ACCTCCACGCTGGGGAACACGCGTGA

Translation (521 aa):
MLCALLLLPSLLGATRASPTSGPQECAKGSTVWCQDLQTAARCGAVGYCQGAVWNKPTAKSLPCDVCQDI
AAAAGNGLNPDATESDILALVMKTCEWLPSQESSAGCKWMVDAHSSAILSMLRGAPDSAPAQVCTALSLC
EPLQRHLATLRPLSKEDTFEAVAPFMANGPLTFHPRQAPEGALCQDCVRQVSRLQEAVRSNLTLADLNIQ
EQCESLGPGLAVLCKNYLFQFFVPADQALRLLPPQELCRKGGFCEELGAPARLTQVVAMDGVPSLELGLP
RKQSEMQMKAGVTCEVCMNVVQKLDHWLMSNSSELMITHALERVCSVMPASITKECIILVDTYSPSLVQL
VAKITPEKVCKFIRLCGNRRRARAVHDAYAIVPSPEWDAENQGSFCNGCKRLLTVSSHNLESKSTKRDIL
VAFKGGCSILPLPYMIQCKHFVTQYEPVLIESLKDMMDPVAVCKKVGACHGPRTPLLGTDQCALGPSFWC
RSQEAAKLCNAVQHCQKHVWKEMHLHAGEHA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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