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Report for CCDS47099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47099.1 Public Homo sapiens 4 CCSER1 24 110 108 CCDS HistoryNCBI Gene:401145Re-query CCDS DB by CCDS ID:47099.1Re-query CCDS DB by GeneID:401145See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47099.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509176.6 ENSP00000425040.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000509176.6Link to Ensembl Protein Viewer:ENSP00000425040.1Re-query CCDS DB by Nucleotide ID:ENST00000509176Re-query CCDS DB by Protein ID:ENSP00000425040
Original member Current member NCBI NM_001145065.2 NP_001138537.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145065.2Link to Protein Sequence:NP_001138537.1Re-query CCDS DB by Nucleotide ID:NM_001145065Re-query CCDS DB by Protein ID:NP_001138537Link to BLAST:NP_001138537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138537.1 900 Q9C0I3-1 900 100% 0 0

Chromosomal Locations for CCDS 47099.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 90308285 90309608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 90312863 90313047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 90400036 90400129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 90468234 90468354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 90628025 90628232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 90723914 90723991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 90815762 90815845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 90923370 90923447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91085950 91085994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91598572 91599057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGGGGGACTCAGGATCAAGACGATCTACCCTGGTCTCCCGGTTGCCAATATTCAGAAGAAGTATTAACA
GAAGACATGATTCTCTTCCTTCTTCACCTTCTTCCAGTAATACAGTTGGTGTCCACAGTTCCTCTCCTTC
CAGCACTAACTCAAGCTCAGGTAGCACAGGTAAACGGAGGAGCATATTCCGTACTCCTTCCATTAGCTTC
CACCATAAGAAGGGGAGTGAGCCTAAGCAAGAGCCTACCAACCAGAACCTTAGTATTTCAAATGGTGCTC
AACCTGGTCACAGCAATATGCAGAAACTGAGTTTGGAAGAACATATTAAGACCAGGGGAAGACATTCTGT
TGGTTTTAGTAGTTCACGAAATAAGAAGATAACAAGATCTTTGACAGAGGATTTTGAAAGGGAAAAAGAG
CACTCAACTAACAAGAATGTCTTTATAAATTGTCTAAGTTCTGGCAAAAGTGAAGGGGATGATTCTGGTT
TCACAGAAGACCAAACTCGTCGTTCTGTTAAGCAGTCAACAAGGAAGCTACTCCCTAAATCTTTTTCATC
TCACTATAAATTTTCTAAGCCAGTTCTACAGAGCCAATCCATTTCATTGGTACAACAGTCTGAATTCTCA
TTGGAAGTTACACAGTACCAAGAGAGAGAACCTGTATTAGTAAGAGCTTCGCCATCCTGTTCTGTGGATG
TAACAGAACGGGCAGGAAGCTCTTTACAATCTCCTTTGCTTTCTGCTGATCTTACCACAGCTCAGACACC
TTCAGAATTTTTAGCCTTGACTGAAGATTCTGTGTCTGAAATGGATGCATTTTCTAAAAGTGGAAGCATG
GCATCCCACTGTGACAACTTTGGCCACAATGATTCTACCTCTCAGATGTCCCTCAATTCTGCTGCTGTTA
CAAAGACAACAACAGAACTTACGGGAACTGTTCCCTGTGCAATTATGTCTCCTGGGAAATATAGGTTAGA
GGGTCAATGTAGCACTGAATCTAATTCATTACCGGAAACCTCTGCTGCTAATCAGAAGGAAGTGTTATTA
CAAATTGCTGAACTACCTGCTACAAGTGTGAGCCACTCAGAGAGTAACCTACCAGCAGATAGTGAAAGAG
AAGAAAATATAGGGTTACAAAATGGTGAAACAATGCTGGGGACAAACTCCCCAAGGAAACTTGGATTTTA
TGAGCAACATAAAGCAATAGCGGAACATGTAAAAGGGATCCATCCTATTTCAGATTCAAAGATAATACCT
ACTTCTGGTGATCATCATATTTTTAACAAAACATCACATGGATATGAAGCAAATCCTGCCAAAGTTCTTG
CCAGTAGTCTCAGTCCATTTCGTGAAGGAAGATTTATAGAGAGGAGACTGCGATCCTCGTCAGAAGGCAC
TGCAGGGAGTAGCAGAATGATTTTGAAACCGAAAGATGGAAATATAGAAGAAGTTAATAGTTTAAGAAAG
CAAAGAGCAGGTTCTTCATCTTCAAAAATGAACAGTTTGGATGTTTTGAATAATTTGGGATCTTGTGAAC
TGGATGAAGATGATCTAATGCTTGATCTTGAATTTTTAGAGGAACAGAGTCTTCACCCTTCTGTTTGCCG
GGAGGACTCATATCACTCTGTCGTCTCATGTGCCGCAGTAGTTCTTACTCCTATGGAACCAATGATAGAA
ATGAAGAAAAGAGAAGAACCAGAATTTCCTGAGCCTTCCAAACAGAATCTTTCCCTGAAATTAACAAAGG
ACGTTGATCAAGAAGCCAGGTGTTCCCACATCAGCCGAATGCCCAACAGTCCATCTGCGGATTGGCCTCT
ACAAGGTGTGGAAGAAAACGGAGGCATAGATTCTCTGCCATTCAGACTGATGTTACAGGACTGCACGGCA
GTCAAGACGTTATTATTAAAGATGAAGAGAGTTCTTCAAGAGAGTGCAGACATGAGTCCAGCAAGCAGTA
CCACGTCACTTCCTGTTAGTCCTCTTACTGAAGAGCCAGTGCCTTTCAAGGATATAATGAAAGATGAATG
CTCGATGCTCAAGCTGCAGCTGAAAGAGAAGGATGAACTCATTTCCCAACTTCAGGAAGAGCTGGGAAAA
GTCCGGCATTTACAGAAGGCTTTTGCTTCAAGAGTAGATAAATCCACACAGACTGAACTACTATGCTATG
ATGGTTTAAACTTGAAAAGACTAGAGACAGTACAAGGAGGGAGAGAGGCTACATATCGAAATCGAATTGT
GAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCG
GCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCC
TGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCCTCACTTCAGACGT
TACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAGAAGGGCTCTCC
ACGTTCTTAGAGAAACCAAAGGACCAAGTTGCTACGGCCCGACAGCATTCGACCTTTACAGGCAGGTTTG
GACAGCCACCCAGAGGGCCAATCTCTTTACACATGTACAGCAGGAAGAATGTGTTTCTCCACCACAATTT
ACACAGCACTGAGCTGCAAACTCTAGGCCAGCAGGATGGGTAA

Translation (900 aa):
MGDSGSRRSTLVSRLPIFRRSINRRHDSLPSSPSSSNTVGVHSSSPSSTNSSSGSTGKRRSIFRTPSISF
HHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEEHIKTRGRHSVGFSSSRNKKITRSLTEDFEREKE
HSTNKNVFINCLSSGKSEGDDSGFTEDQTRRSVKQSTRKLLPKSFSSHYKFSKPVLQSQSISLVQQSEFS
LEVTQYQEREPVLVRASPSCSVDVTERAGSSLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAFSKSGSM
ASHCDNFGHNDSTSQMSLNSAAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLL
QIAELPATSVSHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQHKAIAEHVKGIHPISDSKIIP
TSGDHHIFNKTSHGYEANPAKVLASSLSPFREGRFIERRLRSSSEGTAGSSRMILKPKDGNIEEVNSLRK
QRAGSSSSKMNSLDVLNNLGSCELDEDDLMLDLEFLEEQSLHPSVCREDSYHSVVSCAAVVLTPMEPMIE
MKKREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNSPSADWPLQGVEENGGIDSLPFRLMLQDCTA
VKTLLLKMKRVLQESADMSPASSTTSLPVSPLTEEPVPFKDIMKDECSMLKLQLKEKDELISQLQEELGK
VRHLQKAFASRVDKSTQTELLCYDGLNLKRLETVQGGREATYRNRIVSQNLSTRDRKAIHTPTEDRFRYS
AADQTSPYKNKTCQLPSLCLSNFLKDKELAEVIKHSRGTYETLTSDVTQNLRATVGQSSLKPTAKTEGLS
TFLEKPKDQVATARQHSTFTGRFGQPPRGPISLHMYSRKNVFLHHNLHSTELQTLGQQDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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