NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47158.1 Public Homo sapiens 4 FSTL5 24 110 108 CCDS HistoryNCBI Gene:56884Re-query CCDS DB by CCDS ID:47158.1Re-query CCDS DB by GeneID:56884See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47158.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379164.8 ENSP00000368462.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379164.8Link to Ensembl Protein Viewer:ENSP00000368462.4Re-query CCDS DB by Nucleotide ID:ENST00000379164Re-query CCDS DB by Protein ID:ENSP00000368462
Original member Current member NCBI NM_001128427.3 NP_001121899.1 Accepted alive Link to Nucleotide Sequence:NM_001128427.3Link to Protein Sequence:NP_001121899.1Re-query CCDS DB by Nucleotide ID:NM_001128427Re-query CCDS DB by Protein ID:NP_001121899Link to BLAST:NP_001121899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121899.1 846 Q8N475-2 846 100% 0 0

Chromosomal Locations for CCDS 47158.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 161385747 161386449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161455004 161455128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161459212 161459319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161481020 161481169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161500016 161500134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161510398 161510424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161538166 161538300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161542532 161542693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161587455 161587575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161656328 161656494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161759411 161759531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161775878 161776074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 161920404 161920652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 162033625 162033655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 162111271 162111396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2541 nt):
ATGTTTAAGTGCTGGTCAGTTGTCTTGGTTCTCGGATTCATTTTTCTGGAGTCGGAAGGAAGGCCAACCA
AAGAAGGAGGATATGGCCTTAAATCCTATCAGCCTCTAATGAGATTGCGACATAAGGAAAAAAATCAAGA
AAGTTCAAGAGTCAAAGGATTTATGATTCAGGATGGCCCTTTTGGATCTTGTGAAAATAAGTACTGTGGT
TTGGGAAGACACTGTGTTACCAGCAGAGAGACAGGGCAAGCAGAATGTGCCTGTATGGACCTTTGCAAAC
GTCACTACAAACCTGTGTGTGGATCTGACGGAGAATTCTATGAAAACCACTGTGAAGTGCACAGAGCTGC
TTGCCTGAAAAAACAAAAGATTACCATTGTTCACAATGAAGACTGCTTCTTTAAAGGAGATAAGTGCAAG
ACTACTGAATACAGCAAGATGAAAAATATGCTATTAGATTTACAAAATCAAAAATATATTATGCAAGAAA
ATGAAAATCCTAATGGCGACGACATATCTCGGAAGAAGCTATTGGTGGATCAAATGTTTAAATATTTTGA
TGCAGACAGTAATGGACTTGTAGATATTAATGAACTAACTCAGGTGATAAAACAGGAAGAACTTGGCAAG
GATCTCTTTGATTGTACTTTGTATGTTCTATTGAAATATGATGATTTTAATGCTGACAAGCACCTGGCTC
TTGAAGAATTTTATAGAGCATTCCAAGTGATCCAGTTGAGTCTGCCAGAAGATCAGAAACTAAGCATCAC
TGCAGCAACTGTGGGACAAAGTGCTGTTCTGAGCTGTGCCATTCAAGGAACCCTGAGACCTCCCATTATC
TGGAAAAGGAACAATATTATTCTAAATAATTTAGATTTGGAAGACATCAATGACTTTGGAGATGATGGGT
CCTTGTATATTACTAAGGTTACCACAACTCACGTTGGCAATTACACCTGCTATGCAGATGGCTATGAACA
AGTCTATCAGACTCACATCTTCCAAGTGAATGTTCCTCCAGTCATCCGGGTGTATCCAGAGAGTCAGGCT
AGAGAGCCTGGGGTAACTGCCAGTCTTAGGTGCCATGCAGAGGGCATACCAAAGCCTCAGCTTGGCTGGT
TGAAGAATGGAATTGATATTACACCAAAGCTTTCCAAACAACTCACGCTTCAAGCAAATGGCAGTGAGGT
TCACATAAGCAATGTGCGCTATGAAGATACTGGAGCATACACTTGTATCGCAAAGAATGAAGCAGGAGTG
GATGAAGACATCTCTTCTCTTTTTGTGGAAGACTCTGCTAGAAAGACCCTAGCTAACATATTATGGAGAG
AAGAAGGTCTGGGAATTGGGAACATGTTCTATGTTTTTTATGAAGATGGAATCAAAGTGATACAACCCAT
AGAATGTGAATTTCAGAGGCACATTAAGCCTAGTGAAAAGCTCCTTGGATTTCAGGATGAAGTCTGTCCC
AAAGCTGAGGGAGATGAAGTTCAGAGGTGTGTGTGGGCATCAGCTGTTAATGTCAAAGACAAGTTCATTT
ATGTTGCACAGCCAACTTTGGACAGAGTCCTTATTGTTGATGTGCAGTCCCAAAAAGTTGTTCAGGCAGT
GAGCACAGACCCTGTCCCAGTTAAATTACACTATGACAAATCACATGATCAGGTCTGGGTGCTAAGCTGG
GGTACCTTGGAGAAGACATCACCAACACTACAGGTAATTACCCTGGCCAGTGGGAATGTGCCTCACCACA
CGATCCACACCCAACCAGTGGGAAAGCAATTTGACAGAGTGGATGATTTTTTCATTCCCACCACAACACT
CATTATCACCCATATGAGGTTTGGATTTATTCTTCATAAAGATGAAGCTGCACTACAAAAAATTGATCTT
GAAACCATGTCATACATCAAGACAATTAACTTGAAGGACTATAAGTGCGTTCCTCAGTCATTGGCATATA
CACACTTGGGAGGCTACTACTTCATTGGCTGCAAACCTGACAGCACCGGAGCAGTTTCCCCACAGGTCAT
GGTGGACGGTGTAACTGACTCAGTCATTGGGTTCAATAGTGATGTGACGGGCACTCCATATGTCTCTCCA
GATGGCCACTACCTTGTCAGCATTAATGATGTGAAAGGTCTTGTAAGGGTTCAGTACATTACCATCAGAG
GAGAAATACAGGAGGCTTTTGATATTTACACAAATCTGCACATATCTGATCTGGCATTTCAACCATCCTT
TACTGAAGCCCACCAATATAACATCTACGGTAGTTCAAGCACACAAACTGATGTGCTCTTTGTGGAGCTC
TCTTCTGGGAAGGTCAAGATGATAAAGAGTCTCAAGGAACCACTCAAGGCAGAAGAATGGCCTTGGAACC
GGAAAAACAGGCAAATCCAGGACAGTGGCTTGTTTGGTCAATACCTGATGACACCTTCCAAGGACTCTCT
CTTCATCCTAGATGGACGACTCAATAAATTAAACTGTGAGATCACTGAAGTTGAAAAAGGAAATACAGTC
ATTTGGGTTGGAGATGCCTAA

Translation (846 aa):
MFKCWSVVLVLGFIFLESEGRPTKEGGYGLKSYQPLMRLRHKEKNQESSRVKGFMIQDGPFGSCENKYCG
LGRHCVTSRETGQAECACMDLCKRHYKPVCGSDGEFYENHCEVHRAACLKKQKITIVHNEDCFFKGDKCK
TTEYSKMKNMLLDLQNQKYIMQENENPNGDDISRKKLLVDQMFKYFDADSNGLVDINELTQVIKQEELGK
DLFDCTLYVLLKYDDFNADKHLALEEFYRAFQVIQLSLPEDQKLSITAATVGQSAVLSCAIQGTLRPPII
WKRNNIILNNLDLEDINDFGDDGSLYITKVTTTHVGNYTCYADGYEQVYQTHIFQVNVPPVIRVYPESQA
REPGVTASLRCHAEGIPKPQLGWLKNGIDITPKLSKQLTLQANGSEVHISNVRYEDTGAYTCIAKNEAGV
DEDISSLFVEDSARKTLANILWREEGLGIGNMFYVFYEDGIKVIQPIECEFQRHIKPSEKLLGFQDEVCP
KAEGDEVQRCVWASAVNVKDKFIYVAQPTLDRVLIVDVQSQKVVQAVSTDPVPVKLHYDKSHDQVWVLSW
GTLEKTSPTLQVITLASGNVPHHTIHTQPVGKQFDRVDDFFIPTTTLIITHMRFGFILHKDEAALQKIDL
ETMSYIKTINLKDYKCVPQSLAYTHLGGYYFIGCKPDSTGAVSPQVMVDGVTDSVIGFNSDVTGTPYVSP
DGHYLVSINDVKGLVRVQYITIRGEIQEAFDIYTNLHISDLAFQPSFTEAHQYNIYGSSSTQTDVLFVEL
SSGKVKMIKSLKEPLKAEEWPWNRKNRQIQDSGLFGQYLMTPSKDSLFILDGRLNKLNCEITEVEKGNTV
IWVGDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH