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Report for CCDS47208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47208.1 Public Homo sapiens 5 DDX4 24 110 108 CCDS HistoryNCBI Gene:54514Re-query CCDS DB by CCDS ID:47208.1Re-query CCDS DB by GeneID:54514See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353507.9 ENSP00000334167.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000353507.9Link to Ensembl Protein Viewer:ENSP00000334167.7Re-query CCDS DB by Nucleotide ID:ENST00000353507Re-query CCDS DB by Protein ID:ENSP00000334167
Original member Current member EBI ENST00000354991.9 ENSP00000347087.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354991.9Link to Ensembl Protein Viewer:ENSP00000347087.5Re-query CCDS DB by Nucleotide ID:ENST00000354991Re-query CCDS DB by Protein ID:ENSP00000347087
Original member Current member NCBI NM_001142549.2 NP_001136021.1 Accepted alive Link to Nucleotide Sequence:NM_001142549.2Link to Protein Sequence:NP_001136021.1Re-query CCDS DB by Nucleotide ID:NM_001142549Re-query CCDS DB by Protein ID:NP_001136021Link to BLAST:NP_001136021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136021.1 690 Q9NQI0-2 690 100% 0 0

Chromosomal Locations for CCDS 47208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55738964 55739032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55746164 55746221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55760200 55760277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55763175 55763252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55764014 55764064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55767881 55767940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55781066 55781146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55781934 55781981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785297 55785344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785447 55785494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55785729 55785871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55786518 55786670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55787846 55788000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55790576 55790705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55792641 55792807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55798426 55798571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55813673 55813772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55814901 55815171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55815313 55815423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55816463 55816540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGGAGATGAAGATTGGGAAGCAGAAATCAACCCTCATATGTCTTCCTATGTTCCCATATTTGAGAAGG
ATAGGTATTCTGGAGAAAATGGAGACAATTTTAACAGGACTCCAGCTTCATCATCAGAAATGGATGATGG
ACCTTCTCGAAGAGATCATTTCATGAAAAGTGGATTTGCCTCTGGGCGGAATTTTGGAAACAGAGATGCT
GGTGAGTGTAATAAGCGAGATAATACATCCACAATGGGTGGTTTTGGAGTTGGAAAGAGTTTTGGAAACA
GAGGTTTTTCAAACAGCAGGTTTGAAGATGGTGATAGCTCTGGTTTCTGGAGAGAGTCTAGTAATGACTG
CGAAGATAATCCAACACGGAACAGAGGGTTTTCCAAGAGAGGCGATAATGACTTAGACCCAGACGAATGT
ATGCAGCGCACTGGTGGCCTTTTTGGTTCTAGAAGACCAGTATTAAGTGGCACAGGTAATGGTGATACTT
CTCAAAGCAGAAGTGGCAGTGGAAGTGAACGAGGTGGTTACAAAGGTTTAAATGAAGAAGTAATAACAGG
CTCTGGAAAGAATTCTTGGAAGTCAGAAGCAGAAGGAGGAGAAAGTAGTGATACTCAAGGACCAAAAGTG
ACCTACATACCCCCTCCTCCACCTGAGGATGAGGACTCCATCTTTGCACATTATCAGACAGGCATAAACT
TCGACAAATACGACACTATTCTTGTGGAAGTGTCTGGACATGATGCACCACCAGCAATTCTGACTTTTGA
AGAAGCTAATCTCTGTCAGACACTGAATAACAACATTGCTAAAGCTGGTTATACTAAGCTTACTCCTGTG
CAAAAATACAGTATTCCTATCATACTTGCAGGACGAGATTTGATGGCTTGCGCTCAAACAGGGTCTGGGA
AGACTGCGGCTTTTCTCCTACCAATTTTGGCTCATATGATGCATGATGGAATAACTGCCAGTCGTTTTAA
AGAGTTGCAGGAACCAGAGTGTATTATTGTAGCACCAACTCGAGAATTGGTCAACCAGATTTATTTGGAA
GCCAGAAAATTTTCTTTTGGGACTTGTGTAAGAGCTGTTGTTATATATGGGGGAACCCAGCTGGGACATT
CAATTCGACAAATAGTACAAGGCTGTAATATATTATGTGCTACTCCTGGAAGACTGATGGATATCATAGG
CAAAGAAAAGATTGGTCTCAAACAGATCAAATACTTAGTTTTGGATGAAGCTGATCGCATGTTGGATATG
GGTTTTGGTCCAGAAATGAAGAAGTTAATTTCTTGCCCAGGAATGCCATCAAAGGAACAGCGCCAAACCC
TTATGTTCAGTGCAACTTTTCCAGAGGAAATTCAAAGGTTGGCTGCAGAGTTTTTAAAGTCAAATTATCT
GTTTGTTGCTGTTGGACAAGTGGGTGGAGCATGTAGAGATGTTCAGCAGACCGTTCTCCAAGTTGGCCAG
TTCTCAAAAAGAGAAAAGCTCGTTGAAATTCTGCGAAACATAGGGGATGAAAGAACTATGGTCTTTGTTG
AAACTAAGAAAAAAGCAGATTTTATTGCAACTTTTCTTTGTCAAGAAAAAATATCAACTACAAGTATTCA
TGGTGATCGGGAACAGAGAGAGCGGGAGCAAGCTCTTGGAGATTTTCGCTTTGGAAAGTGCCCAGTTCTT
GTTGCTACTTCAGTAGCTGCCAGAGGGCTGGATATTGAAAATGTGCAACATGTTATCAATTTTGATCTTC
CTTCTACCATTGATGAATATGTTCATCGAATTGGGCGTACTGGTCGTTGTGGGAATACTGGCAGAGCAAT
TTCCTTTTTTGATCTTGAATCGGATAACCATTTAGCACAGCCTCTAGTAAAAGTATTGACAGATGCTCAA
CAGGATGTTCCTGCATGGTTGGAAGAAATTGCCTTTAGTACATACATTCCTGGCTTCAGTGGTAGTACAA
GAGGAAACGTGTTTGCATCAGTTGATACCAGAAAGGGCAAGAGCACTTTGAACACAGCTGGGTTTTCTTC
TTCACAAGCTCCCAATCCAGTAGATGATGAGTCATGGGATTAA

Translation (690 aa):
MGDEDWEAEINPHMSSYVPIFEKDRYSGENGDNFNRTPASSSEMDDGPSRRDHFMKSGFASGRNFGNRDA
GECNKRDNTSTMGGFGVGKSFGNRGFSNSRFEDGDSSGFWRESSNDCEDNPTRNRGFSKRGDNDLDPDEC
MQRTGGLFGSRRPVLSGTGNGDTSQSRSGSGSERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGPKV
TYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPV
QKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLE
ARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDM
GFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQ
FSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVL
VATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQ
QDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRKGKSTLNTAGFSSSQAPNPVDDESWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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