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Report for CCDS47228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47228.1 Public Homo sapiens 5 SERF1A 24 110 108 CCDS HistoryNCBI Gene:8293Re-query CCDS DB by CCDS ID:47228.1Re-query CCDS DB by GeneID:8293See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354833.7 ENSP00000346892.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354833.7Link to Ensembl Protein Viewer:ENSP00000346892.3Re-query CCDS DB by Nucleotide ID:ENST00000354833Re-query CCDS DB by Protein ID:ENSP00000346892
Original member Current member NCBI NM_021967.4 NP_068802.1 Accepted alive Link to Nucleotide Sequence:NM_021967.4Link to Protein Sequence:NP_068802.1Re-query CCDS DB by Nucleotide ID:NM_021967Re-query CCDS DB by Protein ID:NP_068802Link to BLAST:NP_068802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068802.1 110 O75920-1 110 100% 0 0

Chromosomal Locations for CCDS 47228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 70900870 70900876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70901825 70901933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 70916941 70917157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGGCCCGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAAAACCCAGGAAATTAGCAAGG
GAAAGAGGAAAGAGGATAGCTTGACTGCCTCTCAGAGAAAGCAGAGTTCTGGAGGCCAGAAATCTGAGAG
CAAGATGTCAGCTGGGCCACACCTCCCTCTGAAGGCTCCAAGGGAGAATCCTTGCTTTCCTCTTCCAGCT
GCTGGTGGCTCCAGGTATTACTTGGCTTATGGCAGCATAACTCCTATCTCTGCCTTTGTCTTTGTGGTCT
TCTTTTCTGTCTTCTTCCCTTCTTTTTATGAGGACTTTTGCTGTTGGATTTAG

Translation (110 aa):
MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQSSGGQKSESKMSAGPHLPLKAPRENPCFPLPA
AGGSRYYLAYGSITPISAFVFVVFFSVFFPSFYEDFCCWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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