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Report for CCDS47261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47261.1 Public Homo sapiens 5 PDLIM4 24 110 108 CCDS HistoryNCBI Gene:8572Re-query CCDS DB by CCDS ID:47261.1Re-query CCDS DB by GeneID:8572See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379018.7 ENSP00000368303.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379018.7Link to Ensembl Protein Viewer:ENSP00000368303.3Re-query CCDS DB by Nucleotide ID:ENST00000379018Re-query CCDS DB by Protein ID:ENSP00000368303
Original member Current member NCBI NM_001131027.2 NP_001124499.1 Accepted alive Link to Nucleotide Sequence:NM_001131027.2Link to Protein Sequence:NP_001124499.1Re-query CCDS DB by Nucleotide ID:NM_001131027Re-query CCDS DB by Protein ID:NP_001124499Link to BLAST:NP_001124499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124499.1 246 P50479-2 246 100% 0 0

Chromosomal Locations for CCDS 47261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132257735 132257827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132262609 132262760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132266464 132266545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132270915 132271093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132271303 132271466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132272025 132272095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGCCCCATTCCGTGACCCTGCGCGGGCCTTCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCA
GCGCGCCCCTCACCATCTCACGGGTCCATGCTGGCAGCAAGGCTGCATTGGCTGCCCTGTGCCCAGGAGA
CCTGATCCAGGCCATCAATGGTGAGAGCACAGAGCTCATGACACACCTGGAGGCACAGAACCGCATCAAG
GGCTGCCACGATCACCTCACACTGTCTGTGAGCAGGCCTGAGGGTAGGAGCTGGCCCAGTGCCCCTGATG
ACAGCAAGGCTCAGGCACACAGGATCCACATCGATCCTGAGATCCAGGACGGCAGCCCAACAACCAGCAG
GCGGCCCTCAGGCACCGGGACTGGGCCAGAAGATGGCAGACCAAGCCTGGGATCTCCATATGGACAACCC
CCTCGCTTTCCAGTCCCTCACAATGGCAGCAGCGAGGCCACCCTGCCAGCCCAGATGAGCACCCTGCATG
TGTCTCCACCCCCCAGCGCTGACCCAGCCAGAGGCCTCCCGCGGAGCCGGGACTGCAGAGTCGACCTGGG
CTCCGAGGTGTACAGGATGCTGCGGGAGCCAGCCGAGCCCGTGGCCGCGGAGCCCAAGCAGTCAGGCTCC
TTCCGCTACTTGCAGGGCATGCTAGAGGCCGGCGAGGGCGGGGCACCATCGTCAAGGCACGGGACAAGCT
CTACCATCCCGAGTGCTTCATGTGCAGTGACTGCGGCCTGA

Translation (246 aa):
MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIK
GCHDHLTLSVSRPEGRSWPSAPDDSKAQAHRIHIDPEIQDGSPTTSRRPSGTGTGPEDGRPSLGSPYGQP
PRFPVPHNGSSEATLPAQMSTLHVSPPPSADPARGLPRSRDCRVDLGSEVYRMLREPAEPVAAEPKQSGS
FRYLQGMLEAGEGGAPSSRHGTSSTIPSASCAVTAA


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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