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Report for CCDS47285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47285.1 Public Homo sapiens 5 PCDHA12 24 110 108 CCDS HistoryNCBI Gene:56137Re-query CCDS DB by CCDS ID:47285.1Re-query CCDS DB by GeneID:56137See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 47285.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398631.3 ENSP00000381628.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398631.3Link to Ensembl Protein Viewer:ENSP00000381628.2Re-query CCDS DB by Nucleotide ID:ENST00000398631Re-query CCDS DB by Protein ID:ENSP00000381628
Original member Current member NCBI NM_018903.4 NP_061726.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018903.4Link to Protein Sequence:NP_061726.1Re-query CCDS DB by Nucleotide ID:NM_018903Re-query CCDS DB by Protein ID:NP_061726Link to BLAST:NP_061726.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061726.1 941 Q9UN75-1 941 100% 0 0

Chromosomal Locations for CCDS 47285.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140875473 140877839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGGTGATTATCGGACCAAGAGGCCCGGGATCCCAGCGTCTGCTGCTCTCGCTTCTGCTCCTTGCAGCCT
GGGAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTACGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCTCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGA
CACGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGA
AGCTGTGCGGGCGGAGCGCGGAGTGCAGTATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCATGTGGACGTGGAGGTGAAGGACATTAACGACAACCCGCCGGTGTTCAGAGAAAGGGAACAAAAGGTA
CCTGTTTCTGAATCTGCGCCTCTGGACTCTCATTTTCCTCTAGAGGGCGCTTCTGATGCGGATATCGGCG
TAAACTCTCTTTTGACCTATGCGTTAAGTCTAAATGAGAATTTTGAGCTTAAAATAAAAACAAAAAAAGA
TAAAAGTATATTGCCTGAATTAGTTCTTCGGAAGTTATTGGACAGAGAGCAAACGCCAAAACTCAATTTA
TTGCTGATGGTAATCGATGGCGGTAAACCAGAACTAACAGGGTCTGTCCAGATTCAAATAACCGTCCTGG
ATGTGAATGACAATGGTCCGGCGTTTGATAAGCCCAGCTATAAAGTAGTGTTGTCTGAAAATGTCCAAAA
CGACACAAGAGTGATCCAACTAAATGCTTCCGATCCAGACGAAGGACTTAATGGAGAAATTTCCTATGGG
ATCAAAATGATTTTGCCAGTGAGTGAGAAATGTATGTTTTCAATAAATCCAGACACAGGTGAAATTAGAA
TTTATGGTGAACTGGATTTTGAAGAGAATAATGCCTATGAAATTCAGGTTAACGCCATTGATAAAGGGAT
TCCTTCCATGGCAGGTCACAGCATGGTCCTGGTGGAAGTTCTGGACGTGAATGACAATGTCCCTGAAGTA
ATGGTTACTTCACTGTCGCTCCCTGTGCAAGAGGATGCTCAGGTGGGTACCGTCATTGCCCTGATTAGCG
TGTCGGATCGTGACTCTGGAGCCAATGGACAGGTCATCTGCTCACTGACACCTCATGTTCCCTTCAAGCT
GGTGTCCACCTACAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCGGCC
TATGAGCTGGTGGTGACTGCGCGGGATGGGGGCTCGCCTTCGCTGTGGGCCACGGCTAGAGTGTCCGTGG
AGGTGGCCGACGTGAACGACAATGCGCCTGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAA
CAACCCGCCGGGCTGCCACATCTTCACGGTGTCGGCATGGGACGCGGACGCGCAGAAGAACGCGCTGGTG
TCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCACGCACTGTCGAGCTACGTGTCGGTGCACGCGGAGA
GCGGCAAGGTGTACGCGCTGCAGCCGCTAGACCACGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGC
GCGCGACGCCGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGAC
AACGCGCCGGCACTGCTGGCGACTCCGGCTGGCAGCGCAGGAGGCGCAGTTAGCGAGTTGGTACCGCGGT
CGGTGGGTGCGGGCCACGTGGTGGCGAAAGTGCGCGCGGTGGACGCTGACTCCGGCTATAACGCTTGGCT
GTCCTACGAGTTGCAACCGGCGGCGGTCGGCGCGCACATCCCGTTCCACGTGGGGCTGTACACTGGCGAG
ATCAGCACGACACGCATCCTGGATGAGGCGGACGCTCCGCGCCACCGCCTGCTGGTGCTGGTGAAGGACC
ACGGTGAGCCCGCGCTGACGTCCACGGCCACGGTGCTGGTGTCGCTGGTGGAGAACGGCCAGGCCCCAAA
GACGTCGTCGCGGGCCTCAGTGGGCGCTGTGGATCCCGAAGCGGCTCTGGTGGATATTAACGTGTACCTC
ATCATCGCCATCTGTGCGGTGTCCAGCCTGCTGGTGCTCACGCTGCTGCTGTACACTGCGCTGCGTTGCT
CAGCGCCGCCCACCGTGAGCCGGTGCGCGCCGGGCAAGCCCACGCTGGTGTGCTCCAGCGCCGTGGGGAG
TTGGTCTTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGCAGAGAGCCCGCCCAAGACGGACCTCATG
GCCTTCAGCCCAAGCCTTCAGCTGTCTCGAGAAGATTGTTTAAATCCTCCCAGTGAACCACGACAGCCCA
ACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGG
CATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCA
GAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGAC
CAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAAT
CATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAG
GAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACA
GCACGACTGACAACAGTGACCAGTGA

Translation (941 aa):
MVIIGPRGPGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKR
HGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFHVDVEVKDINDNPPVFREREQKV
PVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENFELKIKTKKDKSILPELVLRKLLDREQTPKLNL
LLMVIDGGKPELTGSVQIQITVLDVNDNGPAFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYG
IKMILPVSEKCMFSINPDTGEIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEV
MVTSLSLPVQEDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA
YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAWDADAQKNALV
SYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDAGVPPLGSNVTLQVFVLDEND
NAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAVDADSGYNAWLSYELQPAAVGAHIPFHVGLYTGE
ISTTRILDEADAPRHRLLVLVKDHGEPALTSTATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYL
IIAICAVSSLLVLTLLLYTALRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLM
AFSPSLQLSREDCLNPPSEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEP
EAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKK
EETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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