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Report for CCDS47290.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
47290.1 |
Public |
Homo sapiens |
5 |
PCDHGA3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:56112](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:47290.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:56112](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 47290.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000253812.8 |
ENSP00000253812.7 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000253812.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000253812.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000253812](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000253812](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_018916.4 |
NP_061739.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_018916.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_061739.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_018916](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_061739](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_061739.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_061739.2 |
932 |
Q9Y5H0-1 |
932 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 47290.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2799 nt): ATGACCAATTGCCTGAGTTTCCGAAATGGCAGAGGACTGGCCCTGCTGTGCGCGCTCCTGGGGACGCTGT GCGAAACAGGATCCGGTCAGATCCGCTACTCGGTGTCTGAGGAGCTAGATAAAGGTTCCTTCGTGGGCAA CATCGCTAACGACCTGGGGCTAGAGCCCCGGGAGCTGGCGGAGCGCGGAGTCCGCATCGTCTCCAGAGGT AGGACGCAGCTTTTCTCTCTGAATCCGCAAAGCGGCAGCTTGGTCACCGCGGAGAGGATAGACCGGGAGG AGCTCTGCGCTCAGATCCCGCTGTGTCTGGTAAAAATTAACATTCTGGTTGAGGATAAATTGAAAATTTT TGAAGTAGAAATAGAAATTAAAGATATTAATGATAATGCTCCTAATTTCCCAACAGAGGAATTGGAAATA AAAATTGGTGAACTAACGGTTCCTGGAACCCGATTTCCAATTAAAACTGCTTTTGACCCAGATGTAGGCA TTAACTCCCTGCAGAACTACAAGCTTAGCCCCAATGACTACTTCTCTCTGGCTGTGAATAGCGTCTCTGA GGGGGCCAAGTATCCAGAGCTGGTGCTGGAGCGGGCCCTGGACCGTGAGAAAAAAGAAATTCACCAGCTT GTCCTGGTTGCCTCTGATGGTGGCGACCCTGTCCACTCTGGCAACTTGCACATCCAAGTGATAGTCCTGG ATGCAAATGACAACCCACCAATGTTTACTCAGCCTGAGTACCGTGTGAGTGTTTGGGAGAACGTGCCTGT GGGTACCCGGCTGCTCACGGTGAATGCCACTGACCCTGACGAGGGATTCAATGCTCAAGTGTCTTATATT CTAGATAAAATGCCTGGGAAAATCGCTGAGATTTTCCATCTTAACTCAGTGAGTGGAGAAGTATCAATAT TAAAAAGTCTAGATTATGAGGATGCCATGTTCTATGAAATTAAAATTGAAGCACAGGATGGACCAGGTCT TCTTTCAAGAGCCAAGATTCTAGTCACGGTTCTGGATGTGAATGACAATGCTCCAGAAATTACAATCACG TCTCTCACAAGCTCAGTCCCAGAAGAGGGCACCGTTGGAAGAGAAATTGCTCTTATCGACGTGCATGACC GAGATTCTGGGCAGAATGGGCAGGTTGAAGTTTTTGTCCTGGGAAATCTGCCATTTAAGTTAGAAAAATC AATAGATCAATATTACCGCTTAGTGACGGCCACATCCCTGGACCGCGAACAAATATCAGAATATAACATT AGTCTGAGAGCCTCAGATGGGGGAAGCCCGCCACTGTCCACAGAAACTCACATCACCCTGCATGTGATTG ACATCAATGACAACCCACCCACCTTCCCTCATTTATCCTACTCCGCCTACATTCCAGAAAACAACCCCAG AGGAGCCTCCATCTTCTCAGTGACAGCCCAGGACCCAGATAGCAACAACAACGCCCGCATCACTTATGCA TTGACCGAGGACACTCTCCAGGGGGCGCCCCTGTCCTCCTTCGTCTCTATCAACTCCAACACTGGCGTCC TATACGCGCTGAGATCCTTCGACTACGAGCAATTTAGAGACTTAAAGCTACTGGTGACAGCCAGCGACAG CGGGAACCCTCCACTCAGCAGCAACGTGTCGCTGAACCTGTTCGTGCTGGACCAGAACGACAACGCGCCC GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCTCGCTCCGCAGAGC CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG CCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGCGAGGTGCGCACGGCGCGA GCCCTGCTGGACAGAGACGCGCTCAAGCAGAGCCTCGTGGTGGCCGTCCAGGACCACGGCCAGCCCCCTC TCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGGATCCCCGACATCCTGGCCGACCTGGGCAG CCTCGAGCCCTCCGCCAAACCCAACGATTCGGACCTCACTCTGTACCTGGTGGTGGCGGTGGCCGCGGTC TCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGCGCTCAGGCTGCGGCGCTGGCACAAGTCACGCC TGCTGCAGGCTTCGGGAGGCGGCTTGGCGAGTACGCCCGGCTCGCACTTTGTGGGCGCGGACGGGGTTCG GGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACTGCGGACTCGCGGAAGAGCCACCTGATTTTC CCCCAGCCCAACTATGCGGACACGCTCATCAGCCAGGAGAGCTGTGAGAAAAGCGAGCCTCTTCTGATAA CTCAGGATTTACTTGAAATGAAAGGAGATTCCAACCTACTTCAGCAAGCCCCGCCCAACACGGACTGGCG TTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAAC AACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCT CCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCA CGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG CGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA
Translation (932 aa): MTNCLSFRNGRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRG RTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEI KIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQL VLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQVSYI LDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITIT SLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNI SLRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYA LTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAP EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAV SCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIF PQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK RDGKAPAGGNGNKKKSGKKEKK
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