NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 25, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47291.1 Public Homo sapiens 5 PCDHGA8 24 110 108 CCDS HistoryNCBI Gene:9708Re-query CCDS DB by CCDS ID:47291.1Re-query CCDS DB by GeneID:9708See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398604.3 ENSP00000381605.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398604.3Link to Ensembl Protein Viewer:ENSP00000381605.2Re-query CCDS DB by Nucleotide ID:ENST00000398604Re-query CCDS DB by Protein ID:ENSP00000381605
Original member Current member NCBI NM_032088.2 NP_114477.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032088.2Link to Protein Sequence:NP_114477.1Re-query CCDS DB by Nucleotide ID:NM_032088Re-query CCDS DB by Protein ID:NP_114477Link to BLAST:NP_114477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114477.1 932 Q9Y5G5-1 932 100% 0 0

Chromosomal Locations for CCDS 47291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141392814 141395237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTGTGCGCGCTGCTGGGAACGCTGT
GGGAAATCGGGAGGGGACAGATTCGCTACTCTGTGCCAGAAGAGACGGACAAAGGCTCCTTCGTGGGTAA
TATCTCCAAGGACCTGGGGCTGGACCCCCGGAAGCTGGCGAAGCACGGAGTCCGTATCGTCTCCAGAGGT
AGGACGCAGCTCTTTGCTCTGAACCCGCGCAGCGGCAGCTTGATCACCGCGGGCAGGATAGATCGGGAGG
AGCTCTGCGCTCAGAGCCCGCGGTGTCTGATAAATATTAACACCCTGGTTGAGGATAAAGGAAAACTCTT
TGGGGTAGAAATAGAAATAATTGATATTAACGATAATAACCCAAAATTCCAGGTCGAAGATCTAGAAGTA
AAAATTAACGAAATCGCGGTTCCTGGAGCACGTTATCCACTCCCAGAAGCTGTTGACCCGGATGTGGGCG
TGAACTCCCTCCAGAGCTACCAGCTCAGCCCCAATCACCACTTCTCCCTGGACGTGCAGACTGGAGACAA
TGGAGCCATAAACCCAGAGCTGGTGCTGGAGCGCGCCCTGGACAGGGAGGAAGAGGCTGCTCACCACCTG
GTCCTCACGGCCTCGGATGGCGGCAAGCCGCCTCGCTCTAGCACAGTGCGCATCCACGTGACAGTGTTGG
ATACAAATGACAATGCCCCGGTTTTTCCTCACCCGATTTACCGAGTGAAAGTCCTTGAGAACATGCCCCC
AGGCACGCGGCTGCTTACTGTAACAGCCAGCGACCCGGATGAGGGAATCAACGGAAAAGTGGCATACAAA
TTCCGGAAAATTAATGAAAAACAAACTCCGTTATTCCAGCTTAATGAAAATACTGGGGAAATATCAATAG
CAAAAAGTCTAGATTATGAAGAATGTTCATTTTATGAAATGGAAATACAAGCCGAAGATGTGGGGGCACT
TCTGGGGAGGACCAAATTGCTCATTTCGGTGGAAGATGTAAATGACAATAGACCAGAAGTGATCATTACG
TCTTTGTTTAGCCCAGTGTTAGAAAATTCTCTTCCCGGGACAGTAATTGCCTTCTTGAGTGTGCATGACC
AAGACTCTGGAAAGAATGGTCAAGTTGTCTGTTACACACGTGATAATTTACCTTTTAAATTAGAAAAGTC
AATAGGTAATTATTATAGATTAGTGACAAGGAAATATTTGGACCGAGAAAATGTCTCTATCTACAATATC
ACAGTGATGGCCTCAGATCTAGGAACACCACCTCTGTCCACTGAAACTCAAATCGCTCTGCACGTGGCAG
ACATTAACGACAACCCTCCTACTTTCCCTCATGCCTCCTACTCAGCGTATATCCTAGAGAACAACCTGAG
AGGAGCCTCCATCTTTTCCTTGACTGCACACGACCCCGACAGCCAGGAGAATGCCCAGGTCACTTACTCT
GTGACCGAGGACACGCTGCAGGGGGCGCCCCTGTCCTCGTATATCTCCATCAACTCTGACACCGGTGTCC
TGTATGCGCTGCAATCTTTCGACTATGAGCAGATCCGAGACCTGCAGCTACTGGTAACAGCCAGCGACAG
CGGGGACCCGCCCCTCAGCAGCAACATGTCACTGAGCCTGTTCGTGCTGGACCAGAATGACAACGCGCCC
GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGCTCCGCAGAGC
GTGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG
CCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGCGAGGTGCGCACGGCGCGA
GCCCTGCTGGACAGAGATGCGCTCAAGCAGAGCCTCGTGGTGGCCGTCCAGGACCATGGCCAGCCCCCTC
TCTCCGCCACTGTCACGCTCACCGTAGCCGTGGCTGACAGCATCCCCGAAGTCCTGACCGAGTTGGGCAG
TCTGAAGCCTTCGGTCGACCCGAACGATTCGAGCCTTACACTCTATCTCGTGGTGGCAGTGGCTGCCATC
TCCTGTGTCTTCCTCGCCTTTGTCGCTGTGCTTCTGGGGCTCAGGCTGAGGCGCTGGCACAAGTCACGCC
TGCTCCAGGATTCCGGTGGCAGATTGGTAGGCGTGCCTGCCTCACATTTTGTGGGTGTTGAGGAGGTACA
GGCTTTCCTGCAGACCTATTCCCAGGAAGTCTCCCTCACCGCCGACTCGCGGAAGAGTCACCTGATCTTT
CCCCAGCCCAACTACGCAGACATGCTCATCAGTCAGGAGGGCTGTGAGAAAAATGATTCTTTGTTAACAT
CCGTAGATTTTCATGAATATAAGAATGAAGCTGATCATGGTCAGCAAGCCCCGCCCAACACGGACTGGCG
TTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAAC
AACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCT
CCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCA
CGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG
CGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (932 aa):
MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRG
RTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEV
KINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHHL
VLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYK
FRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIIT
SLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI
TVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYS
VTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAP
EILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAI
SCVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIF
PQPNYADMLISQEGCEKNDSLLTSVDFHEYKNEADHGQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
RDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH