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Report for CCDS47393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47393.1 Public Homo sapiens 6 ZSCAN23 24 110 108 CCDS HistoryNCBI Gene:222696Re-query CCDS DB by CCDS ID:47393.1Re-query CCDS DB by GeneID:222696See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289788.5 ENSP00000289788.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289788.5Link to Ensembl Protein Viewer:ENSP00000289788.4Re-query CCDS DB by Nucleotide ID:ENST00000289788Re-query CCDS DB by Protein ID:ENSP00000289788
Original member Current member NCBI NM_001012455.2 NP_001012458.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012455.2Link to Protein Sequence:NP_001012458.1Re-query CCDS DB by Nucleotide ID:NM_001012455Re-query CCDS DB by Protein ID:NP_001012458Link to BLAST:NP_001012458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012458.1 389 Q3MJ62 389 100% 0 0

Chromosomal Locations for CCDS 47393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28434465 28435078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28435460 28435607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28435859 28436266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGCCATAACCTTGACCCTTCAGACTGCAGAGATGCAGGAAGGACTTCTGGCAGTGAAGGTAAAGGAGG
AAGAGGAGGAACATTCCTGTGGGCCAGAATCAGGCCTGTCAAGAAATAACCCTCATACCAGAGAGATCTT
TCGTAGACGCTTCAGGCAGTTCTGCTATCAGGAGTCCCCTGGGCCCCGGGAGGCTCTTCAAAGACTCCAG
GAGCTCTGCCATCAGTGGCTGAGACCAGAGATGCACACCAAGGAGCAGATCCTAGAGCTGCTGGTGCTGG
AGCAGTTCCTGACTATCCTGCCTGAGGAGCTCCAGGCCTGGGTCAGACAGCACCGTCCTGTGAGTGGAGA
GGAGGCAGTGACTGTGCTGGAGGATTTGGAGAGAGAGCTGGATGACCCAGGAGAGCAGGTCCTGAGCCAT
GCTCATGAACAGGAAGAGTTTGTAAAGGAGAAGGCAACTCCAGGAGCAGCTCAGGAGTCATCAAATGACC
AATTCCAAACCTTGGAAGAGCAACTTGGGTATAATTTGCGAGAGGTGTGCCCAGTTCAAGAGATTGATGG
CAAGGCTGGGACTTGGAATGTGGAGTTAGCCCCAAAGAGGGAGATTTCTCAGGAAGTGAAATCTCTTATA
CAAGTTCTTGGAAAACAGAATGGTAATATTACTCAGATTCCTGAGTATGGAGATACCTGTGACCGTGAGG
GCAGATTGGAAAAGCAAAGGGTGAGCTCTTCAGTGGAGAGACCCTATATCTGTAGTGAATGTGGAAAAAG
CTTCACCCAGAATTCCATCCTTATCGAGCACCAGAGAACACACACAGGTGAGAAGCCTTATGAATGTGAT
GAGTGTGGGCGGGCCTTCAGCCAGAGGTCAGGCCTATTCCAGCACCAGAGACTCCACACTGGGGAGAAGC
GCTACCAGTGCAGTGTTTGTGGCAAAGCCTTCAGCCAGAATGCCGGGCTTTTCCATCACCTCAGAATTCA
CACTGGGGAGAAGCCTTACCAGTGCAATCAGTGCAATAAGAGTTTTAGTCGACGTTCAGTCCTCATTAAG
CATCAGAGAATTCACACTGGAGAGAGACCTTATGAATGTGAAGAATGTGGCAAGAACTTCATTTACCATT
GCAACCTAATCCAGCATCGGAAAGTCCACCCAGTGGCTGAATCAAGCTAG

Translation (389 aa):
MAITLTLQTAEMQEGLLAVKVKEEEEEHSCGPESGLSRNNPHTREIFRRRFRQFCYQESPGPREALQRLQ
ELCHQWLRPEMHTKEQILELLVLEQFLTILPEELQAWVRQHRPVSGEEAVTVLEDLERELDDPGEQVLSH
AHEQEEFVKEKATPGAAQESSNDQFQTLEEQLGYNLREVCPVQEIDGKAGTWNVELAPKREISQEVKSLI
QVLGKQNGNITQIPEYGDTCDREGRLEKQRVSSSVERPYICSECGKSFTQNSILIEHQRTHTGEKPYECD
ECGRAFSQRSGLFQHQRLHTGEKRYQCSVCGKAFSQNAGLFHHLRIHTGEKPYQCNQCNKSFSRRSVLIK
HQRIHTGERPYECEECGKNFIYHCNLIQHRKVHPVAESS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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