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Report for CCDS47411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47411.1 Public Homo sapiens 6 LEMD2 24 110 108 CCDS HistoryNCBI Gene:221496Re-query CCDS DB by CCDS ID:47411.1Re-query CCDS DB by GeneID:221496See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508327.5 ENSP00000421704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000508327.5Link to Ensembl Protein Viewer:ENSP00000421704.1Re-query CCDS DB by Nucleotide ID:ENST00000508327Re-query CCDS DB by Protein ID:ENSP00000421704
Original member Current member NCBI NM_001143944.1 NP_001137416.1 Accepted alive Link to Nucleotide Sequence:NM_001143944.1Link to Protein Sequence:NP_001137416.1Re-query CCDS DB by Nucleotide ID:NM_001143944Re-query CCDS DB by Protein ID:NP_001137416Link to BLAST:NP_001137416.1
Original member Current member NCBI NM_001348709.2 NP_001335638.1 Accepted alive Link to Nucleotide Sequence:NM_001348709.2Link to Protein Sequence:NP_001335638.1Re-query CCDS DB by Nucleotide ID:NM_001348709Re-query CCDS DB by Protein ID:NP_001335638Link to BLAST:NP_001335638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137416.1 201 Q8NC56-2 201 100% 0 0
NP_001335638.1 201 Q8NC56-2 201 100% 0 0

Chromosomal Locations for CCDS 47411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 33772628 33772778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33776954 33777056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33777138 33777239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33778242 33778387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33780100 33780179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 33781077 33781100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGAAGCCCAAGAATATATAGCCAATGTGACCAGCAGCTCCTCCGCCAAGTTTGAAGCCGCACTGACCT
GGATACTGAGCAGTAACAAGGACGTGGGCATCTGGTTGAAAGGAGAAGACCAGTCTGAATTGGTGACGAC
TGTGGACAAGGTGGTCTGCCTGGAATCTGCCCACCCCCGCATGGGTGTTGGCTGCCGCCTGAGCCGGGCC
TTGCTCACTGCTGTCACCAACGTGCTCATCTTCTTCTGGTGCTTGGCTTTTTTGTGGGGGCTCCTAATTC
TCCTAAAATATCGGTGGCGAAAGTTAGAAGAGGAGGAACAAGCCATGTATGAGATGGTGAAGAAGATTAT
AGACGTGGTCCAGGACCATTACGTGGACTGGGAGCAGGACATGGAGCGCTATCCATATGTAGGCATCCTG
CACGTGCGCGACAGCTTGATCCCTCCACAGAGCCGGAGGCGCATGAAGCGTGTCTGGGACCGAGCTGTGG
AGTTCCTGGCCTCCAACGAATCCCGGATCCAGACGGAGTCCCACCGCGTTGCAGGAGAGGACATGCTGGT
GTGGAGATGGACTAAGCCCTCTTCCTTCTCTGACTCAGAGCGATAA

Translation (201 aa):
MEAQEYIANVTSSSSAKFEAALTWILSSNKDVGIWLKGEDQSELVTTVDKVVCLESAHPRMGVGCRLSRA
LLTAVTNVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMYEMVKKIIDVVQDHYVDWEQDMERYPYVGIL
HVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRVAGEDMLVWRWTKPSSFSDSER


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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