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Report for CCDS47578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47578.1 Public Homo sapiens 7 URGCP 24 110 108 CCDS HistoryNCBI Gene:55665Re-query CCDS DB by CCDS ID:47578.1Re-query CCDS DB by GeneID:55665See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453200.6 ENSP00000396918.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000453200.6Link to Ensembl Protein Viewer:ENSP00000396918.1Re-query CCDS DB by Nucleotide ID:ENST00000453200Re-query CCDS DB by Protein ID:ENSP00000396918
Original member Current member NCBI NM_001077663.3 NP_001071131.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077663.3Link to Protein Sequence:NP_001071131.1Re-query CCDS DB by Nucleotide ID:NM_001077663Re-query CCDS DB by Protein ID:NP_001071131Link to BLAST:NP_001071131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071131.1 931 Q8TCY9-1 931 100% 0 0

Chromosomal Locations for CCDS 47578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43876667 43879260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43881659 43881697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43881907 43881957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43887415 43887485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43887790 43887816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43906562 43906575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGGCGTCGCCCGGGATAGAAGTGGAATTACTGGGCAAAGGGCATTCAGATTTGGGAGAAGTAGCCCCAG
AA
ATAAAAGCATCAGAGAGACGAACAGCTGTGGCCATTGCAGATTTGGAATGGAGAGAAATGGAAGGAGA
T
GATTGCGAGTTCCGTTATGGAGATGGTACAAATGAGGCTCAGGACAATGATTTTCCAACAGTGGAGAGA
AGC
AGGCTTCAAGAAATGCTGTCACTTTTGGGCCTAGAGACGTACCAGGTCCAGAAACTCAGCCTCCAGG
AC
TCTCTGCAGATCAGTTTTGACAGTATGAAGAACTGGGCCCCTCAGGTTCCCAAAGACTTGCCCTGGAA
T
TTCCTCAGGAAGTTGCAGGCCCTCAATGCTGATGCCAGGAATACCACTATGGTGCTGGACGTGCTCCCA
GAC
GCCAGGCCTGTGGAGAAGGAGAGCCAGATGGAAGAGGAGATCATCTACTGGGACCCAGCTGATGACC
TT
GCTGCCGACATTTATTCCTTTTCTGAGCTGCCCACCCCTGATACGCCAGTGAACCCCTTAGACCTTCT
C
TGTGCCCTGCTGCTCTCCTCAGACAGTTTCCTGCAACAAGAAATAGCGTTGAAAATGGCCCTCTGCCAG
TTT
GCACTCCCACTCGTGTTGCCTGACTCGGAGAACCACTACCATACATTTCTGCTGTGGGCCATGCGGG
GC
ATTGTGAGGACATGGTGGTCCCAGCCCCCAAGGGGCATGGGGAGCTTCCGGGAAGACAGCGTGGTCTT
G
TCCAGGGCGCCCGCCTTCGCCTTCGTGCGCATGGACGTCAGTAGCAACTCCAAGTCCCAGCTTCTCAAC
GCC
GTCCTCAGCCCGGGCCACAGGCAGTGGGACTGCTTCTGGCATCGGGACCTCAACTTGGGCACCAATG
CC
CGGGAGATTTCGGATGGGTTGGTAGAAATTTCCTGGTTTTTTCCCAGCGGAAGGGAGGACTTGGACAT
T
TTCCCAGAACCTGTGGCCTTTCTGAACCTGAGAGGTGACATCGGGTCTCACTGGCTGCAGTTTAAGCTC
TTG
ACAGAAATCTCCTCCGCTGTGTTTATATTGACTGACAATATCAGTAAGAAGGAATACAAATTGCTGT
AC
TCCATGAAGGAGTCAACCACAAAATACTACTTCATCCTGAGTCCCTACCGTGGGAAGCGCAACACAAA
C
CTGAGATTTCTGAATAAGTTAATTCCTGTGCTGAAAATAGACCACTCACATGTCCTGGTAAAGGTCAGC
AGC
ACTGACAGCGACAGCTTCGTGAAGAGGATCCGGGCCATCGTTGGGAATGTGCTGCGGGCACCCTGCA
GG
CGGGTATCTGTGGAGGACATGGCGCACGCAGCCCGCAAACTGGGCCTAAAGGTCGACGAGGACTGTGA
G
GAGTGTCAGAAAGCGAAAGACCGGATGGAGAGGATTACCAGGAAAATCAAAGACTCGGATGCCTACAGA
AGG
GACGAGCTGAGGCTGCAGGGGGACCCCTGGAGAAAGGCAGCCCAAGTGGAGAAGGAGTTCTGCCAGC
TC
CAGTGGGCCGTGGACCCCCCTGAGAAGCACAGGGCTGAGCTGAGGCGGCGGCTGCTAGAACTTCGAAT
G
CAGCAGAACGGCCATGATCCCTCCTCGGGGGTGCAGGAGTTCATCTCGGGGATCAGCAGCCCCTCCTTG
AGT
GAGAAGCAGTACTTCCTGAGGTGGATGGAGTGGGGCCTGGCACGGGTGGCCCAGCCGCGACTGAGAC
AG
CCTCCGGAGACGCTTCTCACCCTGAGACCAAAGCATGGGGGCACCACAGACGTGGGGGAGCCGCTCTG
G
CCTGAGCCCCTAGGGGTGGAACACTTCTTGCGGGAGATGGGACAGTTTTATGAGGCTGAGAGCTGTCTT
GTG
GAGGCAGGGAGGCTGCCGGCAGGCCAGAGGCGTTTTGCCCACTTCCCAGGCTTGGCCTCGGAGCTGC
TG
CTGACAGGGCTGCCTCTGGAGCTAATCGATGGGAGCACGCTGAGCATGCCCGTCCGCTGGGTCACAGG
G
CTCCTGAAGGAGCTGCACGTCCGACTGGAGAGACGGTCAAGGCTGGTGGTTCTGTCAACCGTCGGGGTG
CCA
GGCACGGGCAAGTCCACACTCCTCAACACCATGTTTGGGCTGCGGTTTGCCACAGGGAAGAGCTGCG
GT
CCTCGAGGGGCCTTCATGCAGCTCATCACAGTGGCTGAGGGCTTCAGCCAGGACCTGGGCTGTGACCA
C
ATCCTGGTGATAGACTCCGGGGGCTTGATAGGTGGGGCCTTGACGTCAGCTGGGGACAGATTTGAGCTG
GAG
GCTTCCTTGGCCACTCTGCTCATGGGACTGAGCAATGTCACCGTGATCAGTCTAGCTGAAACCAAGG
AC
ATTCCAGCAGCTATTCTGCATGCATTTCTGAGGTTAGAAAAAACGGGGCACATGCCCAACTACCAGTT
T
GTATACCAGAACCTTCATGATGTATCTGTTCCCGGCCCTAGGCCCAGAGACAAGAGACAGCTCCTGGAT
CCA
CCTGGTGACCTGAGCAGGGCTGCAGCCCAGATGGAGAAACAGGGCGACGGCTTCCGGGCACTGGCAG
GC
CTGGCCTTCTGCGACCCTGAGAAGCAGCACATCTGGCACATCCCAGGCCTGTGGCACGGAGCACCTCC
C
ATGGCCGCAGTGAGCTTGGCCTACAGTGAAGCCATATTTGAATTGAAGAGATGCCTACTCGAAAACATC
AGG
AACGGCTTGTCGAACCAAAACAAAAACATCCAGCAGCTCATTGAGCTGGTGAGACGGCTGTGA


Translation (931 aa):
MASPGIEVELLGKGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEAQDNDFPTVER
S
RLQEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLRKLQALNADARNTTMVLDVLP
D
ARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTPVNPLDLLCALLLSSDSFLQQEIALKMALCQ
F
ALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMGSFREDSVVLSRAPAFAFVRMDVSSNSKSQLLN
A
VLSPGHRQWDCFWHRDLNLGTNAREISDGLVEISWFFPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKL
L
TEISSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVS
S
TDSDSFVKRIRAIVGNVLRAPCRRVSVEDMAHAARKLGLKVDEDCEECQKAKDRMERITRKIKDSDAYR
R
DELRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQNGHDPSSGVQEFISGISSPSL
S
EKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTTDVGEPLWPEPLGVEHFLREMGQFYEAESCL
V
EAGRLPAGQRRFAHFPGLASELLLTGLPLELIDGSTLSMPVRWVTGLLKELHVRLERRSRLVVLSTVGV
P
GTGKSTLLNTMFGLRFATGKSCGPRGAFMQLITVAEGFSQDLGCDHILVIDSGGLIGGALTSAGDRFEL
E
ASLATLLMGLSNVTVISLAETKDIPAAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQLLD
P
PGDLSRAAAQMEKQGDGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIFELKRCLLENI
R
NGLSNQNKNIQQLIELVRRL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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